Co-expression analysis

Gene ID	Contig11557_at
Gene name
Homology with Arabidopsis	Similar to At5g27860: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig14848_at	Contig14848	-	-	5e+0	At3g55240	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig9946_at	Contig9946	-	-	8e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.9	93.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.5	91.9	GSM160831	7% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24811.1.S1_a_at, orthologous to the query gene, Contig11557_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	Ta.24811.1.S1_a_at	At5g27860	-	-	2e+0	At1g61800	GPT2	O.I.	H.G.	S.X.	Please select
0.80	92.2	TaAffx.7979.1.S1_at	At5g27860	-	-	3e-2	At1g80860	PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.15864.1.S1_at	At5g27860	-	-	1e+1	At5g53680	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.566.1.A1_at	At5g27860	-	-	2e+0	At3g56260	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.7702.1.S1_at	At5g27860	-	-	2e-19	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.5071.1.S1_at	At5g27860	-	-	3e-28	At5g55070	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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