Co-expression analysis

Gene ID	Contig11557_at
Gene name
Homology with Arabidopsis	Similar to At5g27860: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig14848_at	Contig14848	-	-	5e+0	At3g55240	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig9946_at	Contig9946	-	-	8e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.9	93.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.5	91.9	GSM160831	7% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.68822.1.A1_at, orthologous to the query gene, Contig11557_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	94.3	PtpAffx.68822.1.A1_at	At5g27860	hypothetical protein	-	2e+0	At3g23650	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.208084.1.S1_at	At5g27860	hypothetical protein	-	3e-100	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.82206.1.A1_at	At5g27860	hypothetical protein	-	9e-3	At5g53150	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.24588.1.A1_at	At5g27860	NAC domain protein, IPR003441	-	5e-1	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.44199.1.A1_at	At5g27860	hypothetical protein	-	1e-2	At4g39753	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.211774.1.S1_at	At5g27860	hypothetical protein	-	4e-8	At3g62940	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.159822.1.A1_at	At5g27860	-	-	8e-1	At1g64480	CBL8 (CALCINEURIN B-LIKE PROTEIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.210241.1.S1_at	At5g27860	hypothetical protein	-	1e-28	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.37201.1.A1_at	At5g27860	PAF1 complex component	-	1e+0	At4g21990	APR3 (APS REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.44109.1.A1_at	At5g27860	hypothetical protein	-	2e-19	At1g15030	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.2245.2.A1_at	At5g27860	-	-	2e+0	At1g52980	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.93550.1.A1_at	At5g27860	hypothetical protein	-	2e-1	At3g60520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.204644.1.S1_at	At5g27860	hypothetical protein	-	2e-7	At1g49480	RTV1 (related to vernalization1 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.214314.1.S1_s_at	At5g27860	hypothetical protein	-	1e-37	At4g13350	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.26930.2.S1_at	At5g27860	-	-	9e-1	At1g78590	NADK3 (NAD(H) KINASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.221516.1.S1_at	At5g27860	hypothetical protein	-	1e-123	At1g55150	DEAD box RNA helicase, putative (RH20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.201441.1.S1_x_at	At5g27860	hypothetical protein	-	1e-22	At1g79090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.24900.1.A1_at	At5g27860	hypothetical protein	-	2e+0	At4g20470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.11670.1.S1_a_at	At5g27860	hypothetical protein	-	2e-21	At1g20540	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.153364.1.A1_at	At5g27860	hypothetical protein	-	7e-2	At3g15850	FAD5 (FATTY ACID DESATURASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.117027.1.S1_a_at	At5g27860	hypothetical protein	-	5e-29	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.208811.1.S1_s_at	At5g27860	hypothetical protein	-	8e-4	At5g51080	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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