CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11557_at

Gene name
Homology with Arabidopsis Similar to At5g27860: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.62

%ile 84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.94 Contig11557_at Contig11557 - - 2e+0 At5g27860 unknown protein O.I. H.G. S.X.
0.50 66.9 0.94 Contig14848_at Contig14848 - - 5e+0 At3g55240 - O.I. H.G. S.X.
0.50 66.9 0.95 Contig1470_s_at Contig1470 - - 6e-3 At4g00610 DNA-binding storekeeper protein-related O.I. H.G. S.X.
0.50 66.9 0.95 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.44 58.9 0.94 Contig14457_at Contig14457 - - 6e-3 At2g44525 unknown protein O.I. H.G. S.X.
0.40 53.1 0.94 Contig9946_at Contig9946 - - 8e+0 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 96.3 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
4.0 96.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4 94.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.3 94.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9 93.4 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
2.9 93.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7 92.7 GSM372957 genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM372956 genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.5 91.9 GSM160831 7% SWC rep1 GSE6990 Barley drought stress

Inter-species module comparison

A co-expression module including the rice gene, Os06g0198700, orthologous to the query gene, Contig11557_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os06g0198700 At5g27860 - Conserved hypothetical protein 5e-1 At5g11610 exostosin family protein O.I. H.G. S.X.
0.67 87.2 Os06g0664500 At5g27860 - Hypothetical protein 4e-7 At1g53645 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.33 38.8 Os12g0498800 At5g27860 - Hypothetical protein 7e-1 At3g30845 unknown protein O.I. H.G. S.X.
0.30 32.7 Os04g0497400 At5g27860 - 6,7-dimethyl-8-ribityllumazine synthase,chloroplast precursor (EC 2.5.1.9) (DMRL synthase)(Lumazine synthase) 4e-17 At2g44050 COS1 (COI1 SUPPRESSOR1) O.I. H.G. S.X.
0.23 21.2 Os06g0219800 At5g27860 - Protein phosphatase 2A, regulatory subunit B'(PP2A, subunit B', PR53 isoform) (Phosphotyrosylphosphatase activator) (PTPA). Splice isoform 3 8e-29 At4g08960 phosphotyrosyl phosphatase activator (PTPA) family protein O.I. H.G. S.X.
0.09 4.9 Os03g0333300 At5g27860 - Eukaryotic translation initiation factor 2 betasubunit (eIF-2-beta) (P38) 6e-32 At5g20920 EIF2 BETA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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