Co-expression analysis

Gene ID Contig11552_at
Gene name
Homology with ArabidopsisSimilar to At2g35700: ERF38 (ERF FAMILY PROTEIN 38) (HF=1e-13)
Module size 6 genes
NF 0.58
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.89Contig11552_atContig11552--1e-13At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.7388.70.91Contig8487_atContig8487--8e-6At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.5572.00.91Contig9746_atContig9746--6e+0At4g24990ATGP4O.I.H.G.S.X.
0.5066.90.91Contig20641_atContig20641--9e-1At5g01380transcription factorO.I.H.G.S.X.
0.4762.20.89HF11O19r_atHF11O19r--8e-5At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.3342.60.91HV09F14u_atHV09F14u--3e-1At1g71440PFI (PFIFFERLING)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.394.6GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage