Co-expression analysis

Gene ID Contig11541_at
Gene name
Homology with ArabidopsisSimilar to At2g05540: glycine-rich protein (HF=3e-1)
Module size 6 genes
NF 0.12
%ile 15.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.89Contig11541_atContig11541--3e-1At2g05540glycine-rich proteinO.I.H.G.S.X.
0.5066.90.89Contig11542_atContig11542--2e+0At3g19880F-box family proteinO.I.H.G.S.X.
0.5066.90.91Contig11540_s_atContig11540--3e+0At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.1412.90.90HV_CEb0001E04r2_atHV_CEb0001E04r2--3e+0At5g01015unknown proteinO.I.H.G.S.X.
0.064.80.90Contig11715_atContig11715--3e-3At5g54200WD-40 repeat family proteinO.I.H.G.S.X.
0.054.10.90Contig7695_s_atContig7695--1e+0At3g45760unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
4.196.2GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261035Dicktoo-chilling-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.494.8GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.194.1GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.194.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.093.8GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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