Co-expression analysis

Gene ID Contig11540_s_at
Gene name
Homology with ArabidopsisSimilar to At3g44190: pyridine nucleotide-disulphide oxidoreductase family protein (HF=3e+0)
Module size 6 genes
NF 0.52
%ile 72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.87Contig11540_s_atContig11540--3e+0At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.7388.70.85Contig11542_atContig11542--2e+0At3g19880F-box family proteinO.I.H.G.S.X.
0.4458.90.89Contig11541_atContig11541--3e-1At2g05540glycine-rich proteinO.I.H.G.S.X.
0.4356.40.88HVSMEf0019G08r2_s_atHVSMEf0019G08r2--5e-2At4g03940unknown proteinO.I.H.G.S.X.
0.3647.10.88Contig19296_atContig19296--2e+0At4g04760sugar transporter family proteinO.I.H.G.S.X.
0.3240.30.87Contig18313_atContig18313--3e-8At1g10760SEX1 (STARCH EXCESS 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.599.2GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.598.6GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.698.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
6.298.0GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.897.8GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.997.1GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.696.8GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.396.4GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.695.3GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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