Co-expression analysis

Gene ID	Contig11534_at
Gene name
Homology with Arabidopsis	Similar to At5g21910: unknown protein (HF=1e-1)
Module size	34 genes
NF	0.69
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.74	Contig11534_at	Contig11534	-	-	1e-1	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.87	Contig12748_at	Contig12748	-	-	6e-2	At1g80130	binding	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.82	Contig18940_at	Contig18940	-	-	6e-13	At5g09350	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2)	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.85	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.82	EBem10_SQ001_P13_s_at	EBem10_SQ001_P13	-	-	8e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.87	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.88	Contig8058_at	Contig8058	-	-	5e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.86	Contig5270_x_at	Contig5270	-	-	2e+0	At4g14430	IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.85	Contig7164_at	Contig7164	-	-	2e+0	At2g40435	-	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.87	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.87	Contig13441_at	Contig13441	-	-	2e-1	At2g36470	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.87	Contig18343_at	Contig18343	-	-	2e+0	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.87	EBem10_SQ001_I24_s_at	EBem10_SQ001_I24	-	-	2e+1	At4g05494	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.81	Contig13091_s_at	Contig13091	-	-	4e+0	At1g79170	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.87	Contig12234_at	Contig12234	-	-	1e-16	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.87	Contig6089_at	Contig6089	-	-	2e-23	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.86	Contig785_x_at	Contig785	-	-	2e+0	At4g33450	MYB69 (MYB DOMAIN PROTEIN 69)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.84	Contig8085_at	Contig8085	-	-	2e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.85	Contig545_s_at	Contig545	-	-	8e-77	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.78	Contig19116_at	Contig19116	-	-	3e+0	At2g05915	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.82	Contig10268_at	Contig10268	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.84	Contig25993_at	Contig25993	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.82	Contig21381_at	Contig21381	-	-	2e-1	At1g70000	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.85	Contig10433_at	Contig10433	-	-	3e+0	At3g45443	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.87	Contig8825_at	Contig8825	-	-	2e+0	Atmg00920	-	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.81	HVSMEl0010B18r2_at	HVSMEl0010B18r2	-	-	1e+0	At1g49130	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.79	Contig17687_at	Contig17687	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.82	Contig2119_at	Contig2119	-	-	9e-9	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.82	Contig6087_s_at	Contig6087	-	-	7e+0	At5g46900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.84	Contig2562_at	Contig2562	-	-	2e-29	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	Contig1507_at	Contig1507	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.79	Contig18391_at	Contig18391	-	-	1e+1	Atmg01410	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.80	Contig24055_at	Contig24055	-	-	5e+0	At5g40451	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.80	Contig15773_at	Contig15773	-	-	4e+0	At4g05240	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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