CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11527_at

Gene name
Homology with Arabidopsis Similar to At1g76930: ATEXT4 (EXTENSIN 4) (HF=1e+0)

Module size 38 genes

NF 0.22

%ile 27.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 95.7 0.91 Contig11527_at Contig11527 - - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.49 63.7 0.93 Contig24133_at Contig24133 - - 2e+0 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.43 56.4 0.94 Contig25363_at Contig25363 cytokinin dehydrogenase 2 - 3e-5 At3g63440 CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) O.I. H.G. S.X.
0.36 47.1 0.93 Contig11528_s_at Contig11528 - - 4e-1 At5g44570 unknown protein O.I. H.G. S.X.
0.34 43.6 0.92 rbaal39o21_at rbaal39o21 - - 4e-4 At1g29820 unknown protein O.I. H.G. S.X.
0.33 42.6 0.94 Contig10187_at Contig10187 - - 1e-2 At1g72080 unknown protein O.I. H.G. S.X.
0.29 35.5 0.95 Contig11536_at Contig11536 - - 5e-29 At5g41360 XPB2 O.I. H.G. S.X.
0.29 35.5 0.94 Contig15176_at Contig15176 - - 2e+0 At3g47790 ATATH7 O.I. H.G. S.X.
0.28 35.5 0.93 Contig15134_at Contig15134 - - 2e+0 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.28 35.5 0.93 Contig16046_at Contig16046 - - 1e+0 At5g10860 CBS domain-containing protein O.I. H.G. S.X.
0.27 32.1 0.93 Contig16647_at Contig16647 - - 1e-6 At3g17300 - O.I. H.G. S.X.
0.26 30.4 0.95 Contig9322_at Contig9322 - - 3e-3 At1g31220 phosphoribosylglycinamide formyltransferase O.I. H.G. S.X.
0.26 30.4 0.93 Contig5709_at Contig5709 - - 3e-56 At2g30200 [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase O.I. H.G. S.X.
0.26 30.4 0.95 Contig7966_at Contig7966 - - 4e+0 At2g42830 SHP2 (SHATTERPROOF 2) O.I. H.G. S.X.
0.25 28.9 0.95 Contig7904_at Contig7904 - - 2e-4 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) O.I. H.G. S.X.
0.25 28.9 0.94 HF12C18r_at HF12C18r - - 1e+0 At5g22410 peroxidase, putative O.I. H.G. S.X.
0.25 28.9 0.95 Contig11676_at Contig11676 - - 5e+0 At2g33840 tRNA synthetase class I (W and Y) family protein O.I. H.G. S.X.
0.24 27.2 0.94 Contig19436_at Contig19436 - - 1e-3 At1g59720 CRR28 (CHLORORESPIRATORY REDUCTION28) O.I. H.G. S.X.
0.24 27.2 0.94 Contig9663_at Contig9663 - - 9e-1 At2g43390 unknown protein O.I. H.G. S.X.
0.23 26.1 0.93 Contig9452_at Contig9452 - - 4e-28 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein O.I. H.G. S.X.
0.22 24.2 0.94 Contig16079_at Contig16079 - - 1e-4 At2g37640 EXP3 O.I. H.G. S.X.
0.22 24.2 0.94 Contig9852_at Contig9852 - - 2e+1 At5g62260 DNA binding O.I. H.G. S.X.
0.22 24.2 0.94 Contig16054_at Contig16054 - - 4e-1 At1g06830 glutaredoxin family protein O.I. H.G. S.X.
0.21 22.6 0.95 Contig2990_at Contig2990 - - 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.21 22.6 0.93 Contig8401_at Contig8401 casein kinase II alpha - 7e-103 At5g67380 CKA1 (CASEIN KINASE ALPHA 1) O.I. H.G. S.X.
0.21 22.6 0.94 Contig10514_at Contig10514 - - 1e-2 At5g67360 ARA12 O.I. H.G. S.X.
0.20 21.1 0.94 Contig21224_at Contig21224 - - 4e-1 At4g17215 unknown protein O.I. H.G. S.X.
0.19 19.6 0.94 HVSMEg0011K10r2_x_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - O.I. H.G. S.X.
0.19 19.6 0.95 Contig367_s_at Contig367 - - 1e-11 At5g02450 60S ribosomal protein L36 (RPL36C) O.I. H.G. S.X.
0.17 16.9 0.95 Contig16632_at Contig16632 - - 1e+0 At4g29960 unknown protein O.I. H.G. S.X.
0.13 11.6 0.95 Contig25611_at Contig25611 - - 2e-2 At1g68870 unknown protein O.I. H.G. S.X.
0.13 11.6 0.94 Contig12434_at Contig12434 - - 2e-6 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) O.I. H.G. S.X.
0.13 11.6 0.94 Contig14153_s_at Contig14153 - - 1e-14 At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative O.I. H.G. S.X.
0.12 10.4 0.94 Contig10522_at Contig10522 - - 5e+0 At5g03270 unknown protein O.I. H.G. S.X.
0.12 10.4 0.93 Contig11445_at Contig11445 - - 1e-15 At4g04885 PCFS4 (PCF11P-SIMILAR PROTEIN 4) O.I. H.G. S.X.
0.11 9.4 0.95 Contig6454_at Contig6454 - - 6e-1 At3g50520 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.10 8.4 0.94 Contig17511_at Contig17511 - - 8e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.10 8.4 0.94 Contig12138_at Contig12138 - - 1e-4 At5g03080 phosphatidic acid phosphatase-related / PAP2-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.90	95.7	0.91	Contig11527_at	Contig11527	-	-	1e+0	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.
0.49	63.7	0.93	Contig24133_at	Contig24133	-	-	2e+0	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.
0.43	56.4	0.94	Contig25363_at	Contig25363	cytokinin dehydrogenase 2	-	3e-5	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig11528_s_at	Contig11528	-	-	4e-1	At5g44570	unknown protein	O.I.	H.G.	S.X.
0.34	43.6	0.92	rbaal39o21_at	rbaal39o21	-	-	4e-4	At1g29820	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig10187_at	Contig10187	-	-	1e-2	At1g72080	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig11536_at	Contig11536	-	-	5e-29	At5g41360	XPB2	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig15176_at	Contig15176	-	-	2e+0	At3g47790	ATATH7	O.I.	H.G.	S.X.
0.28	35.5	0.93	Contig15134_at	Contig15134	-	-	2e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.
0.28	35.5	0.93	Contig16046_at	Contig16046	-	-	1e+0	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig16647_at	Contig16647	-	-	1e-6	At3g17300	-	O.I.	H.G.	S.X.
0.26	30.4	0.95	Contig9322_at	Contig9322	-	-	3e-3	At1g31220	phosphoribosylglycinamide formyltransferase	O.I.	H.G.	S.X.
0.26	30.4	0.93	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	O.I.	H.G.	S.X.
0.26	30.4	0.95	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.
0.25	28.9	0.94	HF12C18r_at	HF12C18r	-	-	1e+0	At5g22410	peroxidase, putative	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig11676_at	Contig11676	-	-	5e+0	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.
0.24	27.2	0.94	Contig19436_at	Contig19436	-	-	1e-3	At1g59720	CRR28 (CHLORORESPIRATORY REDUCTION28)	O.I.	H.G.	S.X.
0.24	27.2	0.94	Contig9663_at	Contig9663	-	-	9e-1	At2g43390	unknown protein	O.I.	H.G.	S.X.
0.23	26.1	0.93	Contig9452_at	Contig9452	-	-	4e-28	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	O.I.	H.G.	S.X.
0.22	24.2	0.94	Contig16079_at	Contig16079	-	-	1e-4	At2g37640	EXP3	O.I.	H.G.	S.X.
0.22	24.2	0.94	Contig9852_at	Contig9852	-	-	2e+1	At5g62260	DNA binding	O.I.	H.G.	S.X.
0.22	24.2	0.94	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.
0.21	22.6	0.95	Contig2990_at	Contig2990	-	-	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.
0.21	22.6	0.93	Contig8401_at	Contig8401	casein kinase II alpha	-	7e-103	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.
0.21	22.6	0.94	Contig10514_at	Contig10514	-	-	1e-2	At5g67360	ARA12	O.I.	H.G.	S.X.
0.20	21.1	0.94	Contig21224_at	Contig21224	-	-	4e-1	At4g17215	unknown protein	O.I.	H.G.	S.X.
0.19	19.6	0.94	HVSMEg0011K10r2_x_at	HVSMEg0011K10r2	-	-	3e+0	At2g30695	-	O.I.	H.G.	S.X.
0.19	19.6	0.95	Contig367_s_at	Contig367	-	-	1e-11	At5g02450	60S ribosomal protein L36 (RPL36C)	O.I.	H.G.	S.X.
0.17	16.9	0.95	Contig16632_at	Contig16632	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.
0.13	11.6	0.95	Contig25611_at	Contig25611	-	-	2e-2	At1g68870	unknown protein	O.I.	H.G.	S.X.
0.13	11.6	0.94	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.
0.13	11.6	0.94	Contig14153_s_at	Contig14153	-	-	1e-14	At1g20575	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	O.I.	H.G.	S.X.
0.12	10.4	0.94	Contig10522_at	Contig10522	-	-	5e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.
0.12	10.4	0.93	Contig11445_at	Contig11445	-	-	1e-15	At4g04885	PCFS4 (PCF11P-SIMILAR PROTEIN 4)	O.I.	H.G.	S.X.
0.11	9.4	0.95	Contig6454_at	Contig6454	-	-	6e-1	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.10	8.4	0.94	Contig17511_at	Contig17511	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.10	8.4	0.94	Contig12138_at	Contig12138	-	-	1e-4	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 95.5 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
3.6 95.3 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.4 94.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.8 93.1 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
2.6 92.3 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
2.3 90.9 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
2.2 90.3 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.1 89.7 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
2.1 89.7 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.0 89.0 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.7	95.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.6	92.3	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.3	90.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.2	90.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.1	89.7	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.1	89.7	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.0	89.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig11527_at
Gene name
Homology with Arabidopsis	Similar to At1g76930: ATEXT4 (EXTENSIN 4) (HF=1e+0)
Module size	38 genes
NF	0.22
%ile	27.0

Co-expression analysis

Gene ID Contig11527_at Gene name Homology with ArabidopsisSimilar to At1g76930: ATEXT4 (EXTENSIN 4) (HF=1e+0) Module size 38 genes NF 0.22 %ile 27.0

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig11527_at

Gene name
Homology with Arabidopsis Similar to At1g76930: ATEXT4 (EXTENSIN 4) (HF=1e+0)

Module size 38 genes

NF 0.22

%ile 27.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays