Co-expression analysis

Gene ID	Contig11477_at
Gene name
Homology with Arabidopsis	Similar to At1g79040: PSBR (photosystem II subunit R) (HF=8e-5)
Module size	6 genes
NF	0.55
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.96	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig19949_at	Contig19949	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
5.3	97.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.4	96.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

A co-expression module including the grape gene, 1618031_s_at, orthologous to the query gene, Contig11477_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1618031_s_at	At1g79040	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.77	92.3	1616847_s_at	At1g79040	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1613936_x_at	At1g79040	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1611247_s_at	At1g79040	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1610039_s_at	At1g79040	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1622302_s_at	At1g79040	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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