Co-expression analysis

Gene ID Contig11462_at
Gene name
Homology with ArabidopsisSimilar to At5g41770: crooked neck protein, putative / cell cycle protein, putative (HF=8e-5)
Module size 7 genes
NF 0.59
%ile 81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.95Contig11462_atContig11462--8e-5At5g41770crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.6784.70.94Contig6399_atContig6399--5e-9At3g07810heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeO.I.H.G.S.X.
0.6784.70.95Contig23295_atContig23295--5e+0At3g10720pectinesterase, putativeO.I.H.G.S.X.
0.6077.30.96Contig20268_atContig20268--4e-1At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.
0.5572.00.95Contig25106_atContig25106--4e+0At5g64990AtRABH1a (Arabidopsis Rab GTPase homolog H1a)O.I.H.G.S.X.
0.5369.70.95HV_CEa0008P09r2_s_atHV_CEa0008P09r2--1e+0At5g35520MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)O.I.H.G.S.X.
0.4458.90.95Contig19129_atContig19129--2e+0At1g62250unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.997.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM71151Barke stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.596.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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