Co-expression analysis

Gene ID	Contig11454_at
Gene name
Homology with Arabidopsis	Similar to At4g00810: 60S acidic ribosomal protein P1 (RPP1B) (HF=3e-2)
Module size	16 genes
NF	0.43
%ile	59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.79	Contig11454_at	Contig11454	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.85	EBro02_SQ007_J14_at	EBro02_SQ007_J14	-	-	2e+0	At2g22155	-	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	Contig7492_s_at	Contig7492	-	-	4e-16	At3g14790	RHM3 (RHAMNOSE BIOSYNTHESIS 3)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.89	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.83	Contig9227_at	Contig9227	-	-	2e+0	At2g05540	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig22222_at	Contig22222	-	-	1e+0	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	HV_CEb0010F15r2_at	HV_CEb0010F15r2	-	-	5e-6	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.87	HY02O18u_s_at	HY02O18u	-	-	1e+1	At5g59870	HTA6	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.85	HVSMEc0001K23f2_s_at	HVSMEc0001K23f2	-	-	4e+0	At5g24190	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.86	Contig17372_at	Contig17372	-	-	5e+0	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.84	Contig16485_at	Contig16485	-	-	1e+0	At2g20613	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.90	HM10J16r_at	HM10J16r	-	-	4e+0	At5g64400	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.86	Contig21908_at	Contig21908	-	-	1e+0	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.87	Contig6495_at	Contig6495	-	-	7e-1	At3g03870	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.85	Contig2021_at	Contig2021	-	-	8e-34	At2g46860	AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.4	98.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.5	96.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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