Co-expression analysis

Gene ID Contig11449_at
Gene name
Homology with ArabidopsisSimilar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=9e-29)
Module size 12 genes
NF 0.36
%ile 48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.90Contig11449_atContig11449--9e-29At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)O.I.H.G.S.X.
0.4863.20.93Contig10402_atContig10402--2e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4053.10.93Contig3801_atContig3801--4e-26At1g69840band 7 family proteinO.I.H.G.S.X.
0.3545.10.94Contig6881_atContig6881--3e+0At4g15150glycine-rich proteinO.I.H.G.S.X.
0.3545.10.92Contig17249_atContig17249--3e-1At2g05520GRP-3 (GLYCINE-RICH PROTEIN 3)O.I.H.G.S.X.
0.3545.10.93rbaal40l24_s_atrbaal40l24--2e+0At1g31319unknown proteinO.I.H.G.S.X.
0.3342.60.93Contig3173_atContig3173--6e+0At4g05091unknown proteinO.I.H.G.S.X.
0.3240.30.94Contig2935_s_atContig2935--3e-14At4g27130eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.3037.00.94Contig13404_atContig13404--2e+0At1g76750unknown proteinO.I.H.G.S.X.
0.2935.50.92Contig3802_atContig3802--3e-76At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.2528.90.92Contig9995_atContig9995--7e-4At2g22300SR1 (SIGNAL RESPONSIVE 1)O.I.H.G.S.X.
0.2427.20.94HVSMEi0003H24r2_s_atHVSMEi0003H24r2--1e+1At3g55490-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.299.2GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.499.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.993.4GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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