Co-expression analysis

Gene ID	Contig11449_at
Gene name
Homology with Arabidopsis	Similar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=9e-29)
Module size	12 genes
NF	0.36
%ile	48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.90	Contig11449_at	Contig11449	-	-	9e-29	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig10402_at	Contig10402	-	-	2e-1	At3g54780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig3801_at	Contig3801	-	-	4e-26	At1g69840	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig6881_at	Contig6881	-	-	3e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.92	Contig17249_at	Contig17249	-	-	3e-1	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	rbaal40l24_s_at	rbaal40l24	-	-	2e+0	At1g31319	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig3173_at	Contig3173	-	-	6e+0	At4g05091	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig2935_s_at	Contig2935	-	-	3e-14	At4g27130	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig13404_at	Contig13404	-	-	2e+0	At1g76750	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig3802_at	Contig3802	-	-	3e-76	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig9995_at	Contig9995	-	-	7e-4	At2g22300	SR1 (SIGNAL RESPONSIVE 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	HVSMEi0003H24r2_s_at	HVSMEi0003H24r2	-	-	1e+1	At3g55490	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.2	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage