Co-expression analysis

Gene ID	Contig11437_s_at
Gene name
Homology with Arabidopsis	Similar to At3g06780: glycine-rich protein (HF=7e-2)
Module size	25 genes
NF	0.33
%ile	43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.94	Contig11437_s_at	Contig11437	-	-	7e-2	At3g06780	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig9355_s_at	Contig9355	-	-	7e+0	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	Contig11193_s_at	Contig11193	-	-	2e-2	At1g72880	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig4264_at	Contig4264	-	-	1e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig16632_at	Contig16632	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig25891_at	Contig25891	-	-	1e+0	At1g30350	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13164_at	Contig13164	-	-	2e+0	At5g60553	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig7964_at	Contig7964	-	-	4e-2	At1g19140	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig2830_at	Contig2830	-	-	2e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig11793_at	Contig11793	-	-	9e-9	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig17303_at	Contig17303	-	-	2e-2	At1g63170	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig5839_at	Contig5839	-	-	4e-1	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig11109_at	Contig11109	-	-	1e-10	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig10092_s_at	Contig10092	-	-	1e+0	At2g22345	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig7178_s_at	Contig7178	-	-	2e+0	At4g35900	FD	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig13215_at	Contig13215	-	-	3e-10	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
2.8	93.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.7	92.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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