CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11434_at

Gene name
Homology with Arabidopsis Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)

Module size 6 genes

NF 0.33

%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.93 Contig11434_at Contig11434 - - 3e-20 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.91 98.1 0.92 Contig11436_at Contig11436 - - 5e-23 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.50 66.9 0.94 Contig8287_at Contig8287 - - 4e-65 At2g16440 DNA replication licensing factor, putative O.I. H.G. S.X.
0.40 53.1 0.93 Contig5782_at Contig5782 - - 9e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.20 21.1 0.93 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.11 9.4 0.93 Contig23462_at Contig23462 - - 5e+0 At5g43770 proline-rich family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.88	Contig5529_at	Contig5529	-	-	1e+0	At3g22070	proline-rich family protein	O.I.	H.G.	S.X.
0.44	58.9	0.90	Contig18357_at	Contig18357	-	-	2e+0	At3g16970	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.44	58.9	0.93	Contig4150_at	Contig4150	-	-	3e+0	At1g36000	LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5)	O.I.	H.G.	S.X.
0.36	47.1	0.90	Contig3521_at	Contig3521	-	-	1e-3	At4g30010	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.91	Contig8330_at	Contig8330	-	-	2e-13	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	O.I.	H.G.	S.X.
0.36	47.1	0.92	Contig10345_at	Contig10345	-	-	3e-6	At4g35600	CONNEXIN 32	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig6191_at	Contig6191	-	-	1e+0	At5g45980	WOX8 (WUSCHEL RELATED HOMEOBOX 8)	O.I.	H.G.	S.X.
0.35	45.1	0.89	Contig12167_at	Contig12167	-	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	O.I.	H.G.	S.X.
0.33	42.6	0.88	Contig20190_at	Contig20190	-	-	3e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig676_at	Contig676	-	-	2e-20	At5g10980	histone H3	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.
0.31	38.6	0.92	Contig17473_at	Contig17473	-	-	2e-3	At1g26640	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.
0.29	35.5	0.90	HS16L14r_s_at	HS16L14r	-	-	3e-1	At2g40650	pre-mRNA splicing factor PRP38 family protein	O.I.	H.G.	S.X.
0.28	35.5	0.90	Contig17486_at	Contig17486	-	-	4e+0	At5g49380	-	O.I.	H.G.	S.X.
0.27	32.1	0.93	HVSMEg0017O10r2_at	HVSMEg0017O10r2	-	-	4e+0	At4g13955	-	O.I.	H.G.	S.X.
0.26	30.4	0.91	Contig4899_s_at	Contig4899	-	-	2e-2	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.
0.25	28.9	0.92	Contig2761_at	Contig2761	-	-	2e+0	At5g40550	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.93	HVSMEb0014G03r2_at	HVSMEb0014G03r2	-	-	5e-2	At3g48425	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.4 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8 93.1 GSM398270 HS41-1_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7 92.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7 92.7 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5 91.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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