Co-expression analysis

Gene ID	Contig11434_at
Gene name
Homology with Arabidopsis	Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)
Module size	6 genes
NF	0.33
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.93	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.92	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8	93.1	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5	91.9	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the grape gene, 1619529_at, orthologous to the query gene, Contig11434_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1619529_at	At3g20290	hypothetical protein LOC100241890	-	5e-47	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1609620_at	At3g20290	-	-	7e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1612222_at	At3g20290	hypothetical protein LOC100244118	-	1e-3	At1g16560	Per1-like family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1613730_at	At3g20290	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611094_s_at	At3g20290	hypothetical protein LOC100253655	-	2e-11	At3g56460	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611258_at	At3g20290	hypothetical protein LOC100265514	-	4e+0	At1g25988	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618717_at	At3g20290	hypothetical protein LOC100253557	-	7e-19	At3g46220	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1613361_s_at	At3g20290	hypothetical protein LOC100242707	-	4e-2	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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