CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11434_at

Gene name
Homology with Arabidopsis Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)

Module size 6 genes

NF 0.33

%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.93 Contig11434_at Contig11434 - - 3e-20 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.91 98.1 0.92 Contig11436_at Contig11436 - - 5e-23 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.50 66.9 0.94 Contig8287_at Contig8287 - - 4e-65 At2g16440 DNA replication licensing factor, putative O.I. H.G. S.X.
0.40 53.1 0.93 Contig5782_at Contig5782 - - 9e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.20 21.1 0.93 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.11 9.4 0.93 Contig23462_at Contig23462 - - 5e+0 At5g43770 proline-rich family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.4 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8 93.1 GSM398270 HS41-1_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7 92.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7 92.7 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5 91.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.10232.1.S1_a_at, orthologous to the query gene, Contig11434_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 94.4 Ta.10232.1.S1_a_at At3g20290 - - 2e-8 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.48 69.0 Ta.3010.1.A1_at At3g20290 - - 6e+0 At2g01250 60S ribosomal protein L7 (RPL7B) O.I. H.G. S.X.
0.46 66.8 Ta.10139.1.S1_s_at At3g20290 - - 2e-41 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.40 58.4 Ta.18862.2.S1_s_at At3g20290 - - 2e-2 At5g24390 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.33 46.9 TaAffx.3182.1.S1_s_at At3g20290 - - 7e-51 At5g18580 FASS (FASS 1) O.I. H.G. S.X.
0.23 29.0 Ta.12801.1.S1_at At3g20290 - - 3e-3 At3g55070 - O.I. H.G. S.X.
0.21 25.5 Ta.9025.1.S1_at At3g20290 - - 2e-4 At5g21010 ATBPM5 (BTB-POZ and MATH domain 5) O.I. H.G. S.X.
0.19 22.4 Ta.549.1.S1_at At3g20290 - - 3e-43 At3g03120 ATARFB1C (ADP-ribosylation factor B1C) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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