Co-expression analysis

Gene ID	Contig11434_at
Gene name
Homology with Arabidopsis	Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)
Module size	6 genes
NF	0.33
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.93	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.92	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8	93.1	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5	91.9	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222087.1.S1_at, orthologous to the query gene, Contig11434_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	PtpAffx.222087.1.S1_at	At3g20290	hypothetical protein	-	2e-44	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.29775.1.S1_a_at	At3g20290	hypothetical protein	-	8e-50	At3g48790	serine C-palmitoyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.7345.1.S1_s_at	At3g20290	hypothetical protein	-	7e-81	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.5782.1.S1_at	At3g20290	hypothetical protein	-	2e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.144449.1.S1_s_at	At3g20290	hypothetical protein	-	2e-77	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	Ptp.7571.1.S1_s_at	At3g20290	hypothetical protein	-	4e+0	At5g55131	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.152061.1.S1_s_at	At3g20290	tubulin alpha-8 chain	-	6e-149	At5g19780	TUA5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.137281.1.S1_at	At3g20290	-	-	2e-47	At2g18460	LCV3 (like cov 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.78476.1.A1_at	At3g20290	hypothetical protein	-	1e-4	At2g03690	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	Ptp.6262.1.S1_at	At3g20290	hypothetical protein	-	4e-76	At5g40650	SDH2-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.13744.1.S1_at	At3g20290	Ca2+ antiporter/cation exchanger /// Ca2+ antiporter/cation exchanger	-	4e-27	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.104857.1.S1_a_at	At3g20290	hypothetical protein	-	8e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.104716.1.S1_a_at	At3g20290	hypothetical protein	-	3e-8	At4g16444	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.13744.1.S1_a_at	At3g20290	Ca2+ antiporter/cation exchanger	-	4e-27	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.2415.1.A1_s_at	At3g20290	hypothetical protein	-	6e-13	At3g23300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5146.1.S1_at	At3g20290	porin/voltage-dependent anion-selective channel protein	-	4e-20	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.159193.1.S1_at	At3g20290	hypothetical protein	-	2e-18	At5g23670	LCB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.5252.1.A1_at	At3g20290	hypothetical protein	-	3e-61	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.266.1.S1_at	At3g20290	hypothetical protein	-	5e-12	At4g09720	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.202487.1.S1_at	At3g20290	hypothetical protein	-	8e-32	At3g21610	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.201782.1.S1_s_at	At3g20290	hypothetical protein	-	2e-74	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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