Co-expression analysis

Gene ID	Contig11434_at
Gene name
Homology with Arabidopsis	Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)
Module size	6 genes
NF	0.33
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.93	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.92	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8	93.1	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5	91.9	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.86394.1.S1_at, orthologous to the query gene, Contig11434_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	90.6	GmaAffx.86394.1.S1_at	At3g20290	-	-	4e-19	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.6145.1.S1_at	At3g20290	-	-	2e-4	At3g51040	RTH (RTE1-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.3754.1.S1_a_at	At3g20290	-	-	9e-2	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.321.1.A1_s_at	At3g20290	-	-	3e-3	At1g11020	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.3754.1.S1_x_at	At3g20290	-	-	9e-2	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.1301.18.S1_at	At3g20290	-	-	5e-6	At1g22620	ATSAC1 (suppressor of actin 1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.8135.1.S1_at	At3g20290	GT-1	-	3e-36	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.51562.1.S1_at	At3g20290	-	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.8673.1.S1_at	At3g20290	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.3025.1.S1_at	At3g20290	-	-	9e-47	At5g47540	binding	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.644.1.S1_at	At3g20290	-	-	4e-60	At2g32980	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.7026.2.S1_a_at	At3g20290	-	-	1e-13	At1g28320	DEG15	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.3735.2.S1_at	At3g20290	-	-	1e-60	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.2063.1.S1_at	At3g20290	aspartic proteinase 2	-	2e-8	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.2391.1.A1_at	At3g20290	-	-	8e-12	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.2668.2.A1_at	At3g20290	-	-	4e-6	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.8167.1.S1_at	At3g20290	-	-	5e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.2121.1.S1_x_at	At3g20290	-	-	1e-11	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.2121.1.S1_a_at	At3g20290	-	-	4e-11	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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