CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11434_at

Gene name
Homology with Arabidopsis Similar to At3g20290: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) (HF=3e-20)

Module size 6 genes

NF 0.33

%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.93 Contig11434_at Contig11434 - - 3e-20 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.91 98.1 0.92 Contig11436_at Contig11436 - - 5e-23 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.50 66.9 0.94 Contig8287_at Contig8287 - - 4e-65 At2g16440 DNA replication licensing factor, putative O.I. H.G. S.X.
0.40 53.1 0.93 Contig5782_at Contig5782 - - 9e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.20 21.1 0.93 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.11 9.4 0.93 Contig23462_at Contig23462 - - 5e+0 At5g43770 proline-rich family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.4 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8 93.1 GSM398270 HS41-1_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7 92.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7 92.7 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5 91.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5 91.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g20290, orthologous to the query gene, Contig11434_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At3g20290 821573 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520). O.I. H.G. S.X.
0.43 55.3 At1g03280 838581 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein F:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:endomembrane system, transcription factor TFIIE complex;MFOPVBA O.I. H.G. S.X.
0.29 30.3 At5g09410 830800 EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) O.I. H.G. S.X.
0.22 17.5 At5g24450 832516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. H.G. S.X.
0.17 10.2 At4g13730 827007 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFPB O.I. H.G. S.X.
0.15 7.8 At1g47550 841164 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane, exocyst;MFPOBA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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