Co-expression analysis

Gene ID	Contig11418_at
Gene name
Homology with Arabidopsis	Similar to At1g51270: structural molecule/ transmembrane receptor (HF=8e-3)
Module size	6 genes
NF	0.42
%ile	57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.90	Contig11418_at	Contig11418	-	-	8e-3	At1g51270	structural molecule/ transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig10839_at	Contig10839	-	-	3e+0	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig2273_at	Contig2273	-	-	4e+0	At1g69526	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.91	Contig12766_at	Contig12766	-	-	2e-6	At1g51690	ATB ALPHA	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig18939_at	Contig18939	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig18407_at	Contig18407	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	99.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
14.5	99.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.9	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.8	98.3	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage