Co-expression analysis

Gene ID	Contig1140_at
Gene name
Homology with Arabidopsis	Similar to At1g07790: HTB1 (HF=3e-17)
Module size	6 genes
NF	0.17
%ile	20.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.89	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.90	Contig8615_at	Contig8615	-	-	2e+0	At5g24870	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig21112_at	Contig21112	-	-	6e+0	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.89	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.90	HVSMEl0002M03r2_x_at	HVSMEl0002M03r2	-	-	4e+1	At5g55630	ATKCO1	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.90	Contig24376_at	Contig24376	-	-	6e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.7	95.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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