Co-expression analysis

Gene ID	Contig11409_at
Gene name
Homology with Arabidopsis	Similar to At2g25070: protein phosphatase 2C, putative / PP2C, putative (HF=7e-6)
Module size	6 genes
NF	0.18
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.86	Contig11409_at	Contig11409	-	-	7e-6	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	HVSMEb0009H14r2_x_at	HVSMEb0009H14r2	-	-	4e+0	At5g56120	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig7211_at	Contig7211	-	-	1e-2	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig7212_at	Contig7212	-	-	6e-3	At3g07480	electron carrier/ iron-sulfur cluster binding	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.85	Contig14307_at	Contig14307	-	-	6e-7	At2g02500	ISPD	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.86	Contig8462_at	Contig8462	-	-	1e-2	At2g33770	PHO2 (PHOSPHATE 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.6	98.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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