Co-expression analysis

Gene ID	Contig11406_at
Gene name
Homology with Arabidopsis	Similar to At4g16790: hydroxyproline-rich glycoprotein family protein (HF=3e-1)
Module size	6 genes
NF	0.13
%ile	15.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig11406_at	Contig11406	-	-	3e-1	At4g16790	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig3741_s_at	Contig3741	-	-	1e-6	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig6467_at	Contig6467	-	-	7e+0	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.96	Contig5839_at	Contig5839	-	-	4e-1	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	HI05P18u_s_at	HI05P18u	-	-	4e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage