Co-expression analysis

Gene ID	Contig1139_s_at
Gene name
Homology with Arabidopsis	Similar to At3g07110: 60S ribosomal protein L13A (RPL13aA) (HF=1e-19)
Module size	7 genes
NF	0.68
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
10.0	99.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2	98.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.6	97.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the wheat gene, Ta.807.1.S1_a_at, orthologous to the query gene, Contig1139_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.4	Ta.807.1.S1_a_at	At3g07110	ribosomal protein L13a	-	7e-16	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.84	93.6	Ta.24961.2.S1_x_at	At3g07110	BBC1-like protein	-	6e-32	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.76	90.1	Ta.24961.1.S1_x_at	At3g07110	BBC1-like protein	-	8e-22	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.1118.1.S1_at	At3g07110	-	-	2e-62	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.27401.2.S1_x_at	At3g07110	60s ribosomal protein L21	-	7e-34	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.27448.1.S1_s_at	At3g07110	cyc07	-	5e-29	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.30803.2.S1_x_at	At3g07110	-	-	5e-38	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.30803.1.S1_x_at	At3g07110	-	-	2e-25	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.23202.2.S1_s_at	At3g07110	ribosomal protein P1	-	6e-1	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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