CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11372_at

Gene name
Homology with Arabidopsis Similar to At3g27100: - (HF=5e-7)

Module size 6 genes

NF 0.46

%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig11372_at Contig11372 - - 5e-7 At3g27100 - O.I. H.G. S.X.
0.55 72.0 0.96 Contig4715_at Contig4715 - - 1e+0 At4g10810 unknown protein O.I. H.G. S.X.
0.50 66.9 0.96 Contig14154_at Contig14154 - - 2e+0 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.47 62.2 0.96 Contig15165_s_at Contig15165 - - 2e+0 At3g28460 unknown protein O.I. H.G. S.X.
0.28 35.5 0.96 Contig4737_s_at Contig4737 - - 3e-29 At2g35040 AICARFT/IMPCHase bienzyme family protein O.I. H.G. S.X.
0.23 26.1 0.97 Contig9785_at Contig9785 - - 9e-4 At4g25620 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig11372_at	Contig11372	-	-	5e-7	At3g27100	-	O.I.	H.G.	S.X.
0.55	72.0	0.96	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.
0.47	62.2	0.96	Contig15165_s_at	Contig15165	-	-	2e+0	At3g28460	unknown protein	O.I.	H.G.	S.X.
0.28	35.5	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.
0.23	26.1	0.97	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	72.0	0.96	Contig228_s_at	Contig228	-	-	2e+0	At2g39805	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.53	69.7	0.96	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig26297_at	Contig26297	-	-	4e+0	At5g38630	ACYB-1	O.I.	H.G.	S.X.
0.47	62.2	0.94	Contig19303_at	Contig19303	-	-	4e-1	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.46	61.0	0.94	Contig18525_at	Contig18525	-	-	3e-1	At5g27810	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig4507_at	Contig4507	-	-	6e+0	At1g61760	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig6466_at	Contig6466	-	-	5e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig12523_s_at	Contig12523	-	-	3e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig16910_at	Contig16910	-	-	3e-1	At5g03580	polyadenylate-binding protein, putative / PABP, putative	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig20472_at	Contig20472	-	-	1e+0	At2g35460	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig13788_at	Contig13788	-	-	3e+0	At3g18215	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig7333_at	Contig7333	-	-	6e-2	At3g54360	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.38	49.5	0.96	Contig4475_at	Contig4475	-	-	1e-1	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig10533_at	Contig10533	-	-	4e-20	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig4008_at	Contig4008	-	-	1e+0	At2g01930	BPC1 (BASIC PENTACYSTEINE1)	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig9081_at	Contig9081	-	-	4e+0	At3g17350	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig18843_at	Contig18843	-	-	3e-2	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig5357_at	Contig5357	-	-	9e-1	At2g23440	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig7766_at	Contig7766	-	-	1e-34	At5g55910	D6PK (D6 PROTEIN KINASE)	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig6123_at	Contig6123	-	-	3e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.
0.33	42.6	0.97	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig16905_at	Contig16905	-	-	1e-32	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.
0.31	38.6	0.96	EBro03_SQ008_H22_at	EBro03_SQ008_H22	-	-	4e-6	At4g32605	-	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig7661_at	Contig7661	-	-	2e-53	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.
0.29	35.5	0.93	Contig10479_at	Contig10479	-	-	2e+0	At3g22820	allergen-related	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig13490_at	Contig13490	-	-	4e-10	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig2510_at	Contig2510	-	-	6e-4	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig15808_at	Contig15808	-	-	1e-1	At2g35910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig11405_at	Contig11405	-	-	2e-9	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.
0.27	32.1	0.93	HU13P24u_s_at	HU13P24u	-	-	3e-2	At5g23010	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.27	32.1	0.93	HVSMEh0085P21r2_at	HVSMEh0085P21r2	-	-	1e+1	At4g35263	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig7765_at	Contig7765	-	-	5e-55	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig20973_at	Contig20973	-	-	2e-25	At4g19600	CYCT1	O.I.	H.G.	S.X.
0.27	32.1	0.96	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.93	EBem05_SQ001_N05_at	EBem05_SQ001_N05	-	-	1e+0	At3g07910	-	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig20397_at	Contig20397	-	-	2e-3	At1g53420	serine/threonine protein kinase-related	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig15079_at	Contig15079	-	-	1e-2	Atmg00210	-	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig5040_at	Contig5040	-	-	6e-90	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.7 95.5 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
3.6 95.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0 93.8 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.8 93.1 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
2.6 92.3 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
2.5 91.9 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.9	95.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.7	95.5	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.6	92.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.5	91.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig11372_at
Gene name
Homology with Arabidopsis	Similar to At3g27100: - (HF=5e-7)
Module size	6 genes
NF	0.46
%ile	64.2

Co-expression analysis

Gene ID Contig11372_at Gene name Homology with ArabidopsisSimilar to At3g27100: - (HF=5e-7) Module size 6 genes NF 0.46 %ile 64.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig11372_at

Gene name
Homology with Arabidopsis Similar to At3g27100: - (HF=5e-7)

Module size 6 genes

NF 0.46

%ile 64.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays