Co-expression analysis

Gene ID Contig11372_at
Gene name
Homology with ArabidopsisSimilar to At3g27100: - (HF=5e-7)
Module size 6 genes
NF 0.46
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.5572.00.96Contig4715_atContig4715--1e+0At4g10810unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.4762.20.96Contig15165_s_atContig15165--2e+0At3g28460unknown proteinO.I.H.G.S.X.
0.2835.50.96Contig4737_s_atContig4737--3e-29At2g35040AICARFT/IMPCHase bienzyme family proteinO.I.H.G.S.X.
0.2326.10.97Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.96Contig228_s_atContig228--2e+0At2g39805integral membrane Yip1 family proteinO.I.H.G.S.X.
0.5369.70.96Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.5066.90.96Contig26297_atContig26297--4e+0At5g38630ACYB-1O.I.H.G.S.X.
0.4762.20.94Contig19303_atContig19303--4e-1At2g47490mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.4661.00.94Contig18525_atContig18525--3e-1At5g27810sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.4458.90.96Contig4507_atContig4507--6e+0At1g61760harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.4458.90.96Contig6466_atContig6466--5e-1At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.4053.10.94Contig12523_s_atContig12523--3e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.
0.4053.10.94Contig16910_atContig16910--3e-1At5g03580polyadenylate-binding protein, putative / PABP, putativeO.I.H.G.S.X.
0.4053.10.95Contig20472_atContig20472--1e+0At2g35460harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.4053.10.96HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.4053.10.96Contig13788_atContig13788--3e+0At3g18215unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig7333_atContig7333--6e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.
0.3849.50.96Contig4475_atContig4475--1e-1At1g71840transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3647.10.93Contig10533_atContig10533--4e-20At1g63800UBC5 (ubiquitin-conjugating enzyme 5)O.I.H.G.S.X.
0.3647.10.94Contig4008_atContig4008--1e+0At2g01930BPC1 (BASIC PENTACYSTEINE1)O.I.H.G.S.X.
0.3647.10.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig9081_atContig9081--4e+0At3g17350unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.3342.60.95Contig18843_atContig18843--3e-2At4g31580SRZ-22O.I.H.G.S.X.
0.3342.60.95Contig5357_atContig5357--9e-1At2g23440unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig17958_atContig17958--2e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.3342.60.96Contig7766_atContig7766--1e-34At5g55910D6PK (D6 PROTEIN KINASE)O.I.H.G.S.X.
0.3342.60.96Contig12594_atContig12594--3e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.3342.60.96Contig6123_atContig6123--3e+0At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)O.I.H.G.S.X.
0.3342.60.97Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3138.60.96Contig16905_atContig16905--1e-32At5g47520AtRABA5a (Arabidopsis Rab GTPase homolog A5a)O.I.H.G.S.X.
0.3138.60.96EBro03_SQ008_H22_atEBro03_SQ008_H22--4e-6At4g32605-O.I.H.G.S.X.
0.3138.60.96Contig7661_atContig7661--2e-53At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.2935.50.93Contig10479_atContig10479--2e+0At3g22820allergen-relatedO.I.H.G.S.X.
0.2935.50.94Contig13490_atContig13490--4e-10At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.2935.50.95Contig2510_atContig2510--6e-4At3g05550hypoxia-responsive family proteinO.I.H.G.S.X.
0.2732.10.94Contig15808_atContig15808--1e-1At2g35910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2732.10.95Contig11405_atContig11405--2e-9At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.2732.10.93HU13P24u_s_atHU13P24u--3e-2At5g23010MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)O.I.H.G.S.X.
0.2732.10.93HVSMEh0085P21r2_atHVSMEh0085P21r2--1e+1At4g35263unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig7765_atContig7765--5e-55At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.2732.10.95Contig20973_atContig20973--2e-25At4g19600CYCT1O.I.H.G.S.X.
0.2732.10.96rbags1e22_s_atrbags1e22--3e-1At3g56360unknown proteinO.I.H.G.S.X.
0.2528.90.93EBem05_SQ001_N05_atEBem05_SQ001_N05--1e+0At3g07910-O.I.H.G.S.X.
0.2528.90.94Contig20397_atContig20397--2e-3At1g53420serine/threonine protein kinase-relatedO.I.H.G.S.X.
0.2528.90.96Contig15079_atContig15079--1e-2Atmg00210-O.I.H.G.S.X.
0.2528.90.96Contig5040_atContig5040--6e-90At5g49460ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.895.7GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.795.5GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
2.591.9GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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