Co-expression analysis

Gene ID Contig11372_at
Gene name
Homology with ArabidopsisSimilar to At3g27100: - (HF=5e-7)
Module size 6 genes
NF 0.46
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.5572.00.96Contig4715_atContig4715--1e+0At4g10810unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.4762.20.96Contig15165_s_atContig15165--2e+0At3g28460unknown proteinO.I.H.G.S.X.
0.2835.50.96Contig4737_s_atContig4737--3e-29At2g35040AICARFT/IMPCHase bienzyme family proteinO.I.H.G.S.X.
0.2326.10.97Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.895.7GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.795.5GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
2.591.9GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.955.1.A1_at, orthologous to the query gene, Contig11372_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.6Zm.955.1.A1_atAt3g27100e2 protein-2e-6At3g27100-O.I.H.G.S.X.
0.158.6Zm.19355.1.A1_atAt3g27100STIP1 homology and U box-containing protein 1-2e+0At3g14820carboxylesterase/ hydrolase, acting on ester bonds / lipaseO.I.H.G.S.X.
0.136.8Zm.6763.3.S1_atAt3g27100--1e+0At3g59845NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.125.9Zm.2768.1.A1_atAt3g27100Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.115.3Zm.2038.1.S1_atAt3g27100hypothetical protein LOC100279929-4e-4At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.094.0Zm.7727.5.A1_atAt3g27100--1e-25At4g02890UBQ14O.I.H.G.S.X.
0.094.0Zm.5095.1.S1_s_atAt3g27100hypothetical protein LOC100192930-2e+0At4g16447unknown proteinO.I.H.G.S.X.
0.072.9Zm.17186.1.A1_atAt3g27100hypothetical protein LOC100280351-5e-5At5g57800CER3 (ECERIFERUM 3)O.I.H.G.S.X.
0.031.1ZmAffx.122.1.A1_atAt3g27100hypothetical protein LOC100217096-8e-1At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.020.7ZmAffx.356.1.A1_atAt3g27100--3e-3At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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