CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11372_at

Gene name
Homology with Arabidopsis Similar to At3g27100: - (HF=5e-7)

Module size 6 genes

NF 0.46

%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig11372_at Contig11372 - - 5e-7 At3g27100 - O.I. H.G. S.X.
0.55 72.0 0.96 Contig4715_at Contig4715 - - 1e+0 At4g10810 unknown protein O.I. H.G. S.X.
0.50 66.9 0.96 Contig14154_at Contig14154 - - 2e+0 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.47 62.2 0.96 Contig15165_s_at Contig15165 - - 2e+0 At3g28460 unknown protein O.I. H.G. S.X.
0.28 35.5 0.96 Contig4737_s_at Contig4737 - - 3e-29 At2g35040 AICARFT/IMPCHase bienzyme family protein O.I. H.G. S.X.
0.23 26.1 0.97 Contig9785_at Contig9785 - - 9e-4 At4g25620 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.7 95.5 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
3.6 95.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0 93.8 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
2.8 93.1 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
2.6 92.3 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
2.5 91.9 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12315.2.S1_a_at, orthologous to the query gene, Contig11372_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 Ta.12315.2.S1_a_at At3g27100 - - 4e-1 At3g61260 DNA-binding family protein / remorin family protein O.I. H.G. S.X.
0.46 66.8 TaAffx.31638.1.S1_at At3g27100 - - 8e+0 At5g39510 SGR4 (SHOOT GRAVITROPSIM 4) O.I. H.G. S.X.
0.40 58.4 Ta.7463.1.S1_at At3g27100 - - 7e-6 At4g26870 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative O.I. H.G. S.X.
0.40 58.4 Ta.5016.1.S1_at At3g27100 - - 2e+0 At1g31720 unknown protein O.I. H.G. S.X.
0.33 46.9 Ta.3070.1.S1_a_at At3g27100 mitogen-activated protein kinase 2 - 7e-27 At5g19010 MPK16 O.I. H.G. S.X.
0.31 42.7 Ta.3070.1.S1_x_at At3g27100 mitogen-activated protein kinase 2 - 7e-27 At5g19010 MPK16 O.I. H.G. S.X.
0.17 19.8 TaAffx.7902.1.S1_at At3g27100 - - 6e+0 At4g39930 unknown protein O.I. H.G. S.X.
0.17 19.8 Ta.28732.2.A1_x_at At3g27100 - - 1e-90 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.16 18.2 Ta.13272.1.A1_at At3g27100 - - 6e+0 At4g08790 nitrilase, putative O.I. H.G. S.X.
0.15 17.1 Ta.10437.1.A1_at At3g27100 - - 1e+0 At5g39540 - O.I. H.G. S.X.
0.15 17.1 Ta.2918.1.A1_at At3g27100 - - 5e+0 At3g46260 protein kinase-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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