Co-expression analysis

Gene ID Contig11372_at
Gene name
Homology with ArabidopsisSimilar to At3g27100: - (HF=5e-7)
Module size 6 genes
NF 0.46
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.5572.00.96Contig4715_atContig4715--1e+0At4g10810unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.4762.20.96Contig15165_s_atContig15165--2e+0At3g28460unknown proteinO.I.H.G.S.X.
0.2835.50.96Contig4737_s_atContig4737--3e-29At2g35040AICARFT/IMPCHase bienzyme family proteinO.I.H.G.S.X.
0.2326.10.97Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.895.7GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.795.5GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
2.591.9GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g27100, orthologous to the query gene, Contig11372_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g27100822329-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;MPOFO.I.H.G.S.X.
0.4963.5At5g53560835438CB5-E (CYTOCHROME B5 ISOFORM E)Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.O.I.H.G.S.X.
0.4659.8At3g03100821104NADH:ubiquinone oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:unknown;C:mitochondrion, respiratory chain complex I;OBMFPO.I.H.G.S.X.
0.4152.4At5g46030834644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.H.G.S.X.
0.3745.0At1g66410842959CAM4 (calmodulin 4)encodes a calmodulinO.I.H.G.S.X.
0.3643.6At1g67350843056unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PO.I.H.G.S.X.
0.3541.6At1g10590837601DNA-binding protein-relatedF:nucleic acid binding;P:biological_process unknown;C:plasma membrane;PAOO.I.H.G.S.X.
0.3541.6At1g26550839195peptidyl-prolyl cis-trans isomerase PPIC-type family proteinF:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.3032.1At1g08480837369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, plastid, vacuole;PO.I.H.G.S.X.
0.3032.1At3g52730824439ubiquinol-cytochrome C reductase UQCRX/QCR9-like family proteinF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane;PFMOO.I.H.G.S.X.
0.3032.1At2g38130818391ATMAK3Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.O.I.H.G.S.X.
0.2930.3At1g04750839419VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)vesicle-associated membrane protein 7B (At VAMP7B) mRNA,O.I.H.G.S.X.
0.2930.3At4g30010829124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.H.G.S.X.
0.2830.3At4g34700829622complex 1 family protein / LVR family proteinF:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPOO.I.H.G.S.X.
0.2726.2At5g55000835591FIP2FH protein interacting protein FIP2O.I.H.G.S.X.
0.2726.2At3g18430821372calcium-binding EF hand family proteinF:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFBO.I.H.G.S.X.
0.2726.2At4g37830829939cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPOO.I.H.G.S.X.
0.2726.2At5g20570832179RBX1 (RING-BOX 1)Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.O.I.H.G.S.X.
0.2624.4At2g17390816246AKR2B (ANKYRIN REPEAT-CONTAINING 2B)Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.O.I.H.G.S.X.
0.2420.7At2g25280817066-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFPO.I.H.G.S.X.
0.2319.3At2g47380819351cytochrome c oxidase subunit Vc family protein / COX5C family proteinF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;PO.I.H.G.S.X.
0.2217.5At1g20575838646dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeF:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPVO.I.H.G.S.X.
0.2217.5At5g60620836183phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPFO.I.H.G.S.X.
0.2115.8At2g18040816316PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bondsO.I.H.G.S.X.
0.1710.2At1g03330839526small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.H.G.S.X.
0.092.8At1g02130837023ARA-5 (ARABIDOPSIS RAS 5)Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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