Co-expression analysis

Gene ID	Contig11287_s_at
Gene name
Homology with Arabidopsis	Similar to At5g15960: KIN1 (HF=1e+0)
Module size	6 genes
NF	0.60
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.2	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4	96.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the grape gene, 1613989_at, orthologous to the query gene, Contig11287_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1613989_at	At5g15960	-	-	7e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612639_at	At5g15960	hypothetical protein LOC100261631	-	1e-6	At2g39910	binding	O.I.	H.G.	S.X.	Please select
0.17	18.2	1613521_at	At5g15960	metallothionein	-	5e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611160_at	At5g15960	-	-	4e+0	At1g48330	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1612360_at	At5g15960	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.01	2.1	1618063_at	At5g15960	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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