CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11287_s_at

Gene name
Homology with Arabidopsis Similar to At5g15960: KIN1 (HF=1e+0)

Module size 6 genes

NF 0.60

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.90 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 O.I. H.G. S.X.
0.67 84.7 0.90 Contig16253_at Contig16253 - - 7e+0 At5g48515 - O.I. H.G. S.X.
0.53 69.7 0.91 Contig20219_at Contig20219 - - 1e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) O.I. H.G. S.X.
0.50 66.9 0.91 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) O.I. H.G. S.X.
0.40 53.1 0.91 Contig5728_at Contig5728 - - 1e-15 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) O.I. H.G. S.X.
0.33 42.6 0.92 Contig18431_at Contig18431 - - 9e-2 At1g78530 protein kinase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.6 99.2 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
6.2 98.0 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3 97.4 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2 97.4 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.0 97.2 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.7 96.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6 96.8 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4 96.6 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221351.1.S1_s_at, orthologous to the query gene, Contig11287_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.221351.1.S1_s_at At5g15960 hypothetical protein - 7e-2 At4g24275 - O.I. H.G. S.X.
0.40 67.0 PtpAffx.222184.1.S1_at At5g15960 hypothetical protein - 3e-3 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative O.I. H.G. S.X.
0.36 61.6 PtpAffx.212310.1.S1_at At5g15960 hypothetical protein - 1e+0 At3g04220 disease resistance protein (TIR-NBS-LRR class), putative O.I. H.G. S.X.
0.29 50.5 PtpAffx.205611.1.S1_at At5g15960 hypothetical protein - 3e+0 At5g45010 ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) O.I. H.G. S.X.
0.06 9.8 PtpAffx.30151.2.S1_a_at At5g15960 - - 2e-1 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.
0.05 8.3 PtpAffx.205485.1.S1_at At5g15960 hypothetical protein - 9e-17 At1g78060 glycosyl hydrolase family 3 protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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