Co-expression analysis

Gene ID	Contig11287_s_at
Gene name
Homology with Arabidopsis	Similar to At5g15960: KIN1 (HF=1e+0)
Module size	6 genes
NF	0.60
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.2	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4	96.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL577Contig1_at, orthologous to the query gene, Contig11287_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	PsAffx.CL577Contig1_at	At5g15960	-	-	2e-2	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.68	86.4	PsAffx.CL2360Contig1_at	At5g15960	-	-	2e-1	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.C21000102_at	At5g15960	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.psHB020xH07f_at	At5g15960	-	-	9e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.59	79.5	PsAffx.CL182Contig1_at	At5g15960	-	-	2e-1	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.CL2207Contig1_at	At5g15960	-	-	3e-1	At2g33385	arpc2b (actin-related protein C2B)	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.C257000015_s_at	At5g15960	-	-	2e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.CL1416Contig1_at	At5g15960	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.C167000014_at	At5g15960	-	-	1e+0	At2g27930	binding	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.CL869Contig1_at	At5g15960	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.CL357Contig1_at	At5g15960	-	-	7e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL730Contig1_at	At5g15960	-	-	4e+0	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C103000011_at	At5g15960	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	PsAffx.C173000014_at	At5g15960	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	PsAffx.C55000025_s_at	At5g15960	-	-	5e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	PsAffx.C190000012_at	At5g15960	-	-	7e+0	At4g14740	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.36	50.8	PsAffx.CL1226Contig1_at	At5g15960	-	-	2e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.CL716Contig1_at	At5g15960	-	-	2e+0	At3g01020	ISU2 (ISCU-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.CL447Contig1_at	At5g15960	-	-	9e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	PsAffx.CL134Contig1_at	At5g15960	-	-	5e-1	At1g77746	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	PsAffx.CL242Contig1_at	At5g15960	-	-	6e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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