CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11287_s_at

Gene name
Homology with Arabidopsis Similar to At5g15960: KIN1 (HF=1e+0)

Module size 6 genes

NF 0.60

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.90 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 O.I. H.G. S.X.
0.67 84.7 0.90 Contig16253_at Contig16253 - - 7e+0 At5g48515 - O.I. H.G. S.X.
0.53 69.7 0.91 Contig20219_at Contig20219 - - 1e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) O.I. H.G. S.X.
0.50 66.9 0.91 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) O.I. H.G. S.X.
0.40 53.1 0.91 Contig5728_at Contig5728 - - 1e-15 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) O.I. H.G. S.X.
0.33 42.6 0.92 Contig18431_at Contig18431 - - 9e-2 At1g78530 protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.6 99.2 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
6.2 98.0 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3 97.4 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2 97.4 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.0 97.2 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.7 96.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6 96.8 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4 96.6 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g15960, orthologous to the query gene, Contig11287_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.57 73.8 At5g15960 831453 KIN1 cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level. O.I. H.G. S.X.
0.67 81.6 At4g30650 829188 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. H.G. S.X.
0.60 75.7 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. H.G. S.X.
0.38 46.7 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. H.G. S.X.
0.22 17.5 At4g30660 829189 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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