Co-expression analysis

Gene ID	Contig11252_at
Gene name
Homology with Arabidopsis	Similar to At1g01130: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.28
%ile	35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.89	Contig11252_at	Contig11252	-	-	2e+0	At1g01130	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig11250_s_at	Contig11250	-	-	4e+0	At5g22810	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.89	Contig2688_s_at	Contig2688	-	-	1e-59	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig18428_at	Contig18428	-	-	7e-7	At1g15060	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.89	Contig2873_s_at	Contig2873	-	-	2e-4	At1g31630	AGL86 (AGAMOUS-LIKE 86)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.89	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.5	99.2	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.8	98.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.6	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.5	96.7	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the wheat gene, Ta.16236.1.S1_at, orthologous to the query gene, Contig11252_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.16236.1.S1_at	At1g01130	-	-	3e+0	At3g12510	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	Ta.16716.1.S1_x_at	At1g01130	-	-	2e-1	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.18486.1.S1_at	At1g01130	-	-	2e-1	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.7166.1.S1_at	At1g01130	-	-	1e+0	At4g05490	F-box family protein (FBL22)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.9841.1.A1_at	At1g01130	-	-	5e+0	At2g18660	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.99282.1.A1_at	At1g01130	-	-	5e+0	At3g15250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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