Co-expression analysis

Gene ID	Contig11252_at
Gene name
Homology with Arabidopsis	Similar to At1g01130: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.28
%ile	35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.89	Contig11252_at	Contig11252	-	-	2e+0	At1g01130	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig11250_s_at	Contig11250	-	-	4e+0	At5g22810	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.89	Contig2688_s_at	Contig2688	-	-	1e-59	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig18428_at	Contig18428	-	-	7e-7	At1g15060	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.89	Contig2873_s_at	Contig2873	-	-	2e-4	At1g31630	AGL86 (AGAMOUS-LIKE 86)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.89	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.5	99.2	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.8	98.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.6	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.5	96.7	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.206478.1.S1_at, orthologous to the query gene, Contig11252_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	PtpAffx.206478.1.S1_at	At1g01130	hypothetical protein	-	1e-7	At2g42040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.206876.1.S1_at	At1g01130	hypothetical protein	-	2e-2	At2g43990	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.202372.1.S1_at	At1g01130	hypothetical protein	-	2e-5	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.90782.1.S1_s_at	At1g01130	hypothetical protein	-	2e+0	At1g06920	OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.15810.1.S1_at	At1g01130	hypothetical protein	-	3e-2	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.211939.1.S1_s_at	At1g01130	hypothetical protein	-	1e-37	At2g04280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.4184.1.S1_s_at	At1g01130	-	-	1e+0	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.4580.1.S1_at	At1g01130	hypothetical protein	-	1e-1	At4g17060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.203818.1.S1_x_at	At1g01130	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.81831.1.S1_at	At1g01130	hypothetical protein	-	3e-2	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.6399.1.S1_at	At1g01130	-	-	3e-23	At3g16060	kinesin motor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.210846.1.S1_at	At1g01130	hypothetical protein	-	2e-4	At1g09280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.155705.1.S1_s_at	At1g01130	hypothetical protein	-	5e-7	At5g45600	GAS41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.1307.1.S1_at	At1g01130	-	-	2e-12	At1g10590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.210070.1.S1_at	At1g01130	hypothetical protein	-	3e-39	At2g38130	ATMAK3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.8027.2.A1_a_at	At1g01130	hypothetical protein	-	1e-4	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.145088.1.A1_at	At1g01130	hypothetical protein	-	1e+0	At3g50900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.12440.1.S1_at	At1g01130	hypothetical protein	-	3e-35	At4g35740	RecQl3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.5030.1.A1_x_at	At1g01130	hypothetical protein	-	4e-64	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.93600.1.A1_at	At1g01130	hypothetical protein	-	1e+0	At4g09970	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.224895.1.S1_at	At1g01130	hypothetical protein	-	6e-67	At2g20300	ALE2 (Abnormal Leaf Shape 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.198.1.S1_at	At1g01130	hypothetical protein	-	3e-115	Atcg00750	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.3842.1.A1_a_at	At1g01130	hypothetical protein	-	1e-1	At5g13470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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