CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11252_at

Gene name
Homology with Arabidopsis Similar to At1g01130: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.28

%ile 35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.89 Contig11252_at Contig11252 - - 2e+0 At1g01130 unknown protein O.I. H.G. S.X.
0.50 66.9 0.89 Contig11250_s_at Contig11250 - - 4e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.31 38.6 0.89 Contig2688_s_at Contig2688 - - 1e-59 At5g08530 CI51 (51 kDa subunit of complex I) O.I. H.G. S.X.
0.23 26.1 0.90 Contig18428_at Contig18428 - - 7e-7 At1g15060 - O.I. H.G. S.X.
0.14 12.9 0.89 Contig2873_s_at Contig2873 - - 2e-4 At1g31630 AGL86 (AGAMOUS-LIKE 86) O.I. H.G. S.X.
0.11 9.4 0.89 EBpi01_SQ004_D06_s_at EBpi01_SQ004_D06 - - 6e+0 At1g54870 binding / catalytic/ oxidoreductase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.3 99.3 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
10.5 99.2 GSM71146 OWB-D unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
8.8 98.9 GSM71147 OWB-D unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
6.6 98.2 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM261052 Bonus Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
4.5 96.7 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4 94.8 GSM68904 27 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the rice gene, Os06g0302000, orthologous to the query gene, Contig11252_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 Os06g0302000 At1g01130 - Hypothetical protein 3e+0 At1g06475 unknown protein O.I. H.G. S.X.
0.95 99.6 Os11g0306400 At1g01130 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.67 87.2 Os07g0643800 At1g01130 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. H.G. S.X.
0.62 81.5 Os03g0306700 At1g01130 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.61 81.2 Os11g0307300 At1g01130 - Herbicide safener binding protein 6e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.55 73.7 Os08g0297800 At1g01130 - Sulfotransferase family protein 7e-4 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.53 71.3 Os11g0126800 At1g01130 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.52 69.6 Os04g0189012 At1g01130 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.50 68.0 Os01g0307500 At1g01130 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.48 63.7 Os06g0500700 At1g01130 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 O.I. H.G. S.X.
0.39 48.3 Os01g0937200 At1g01130 - Peptidase aspartic family protein 2e-1 At3g57785 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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