Co-expression analysis

Gene ID Contig11252_at
Gene name
Homology with ArabidopsisSimilar to At1g01130: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.28
%ile 35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.89Contig11252_atContig11252--2e+0At1g01130unknown proteinO.I.H.G.S.X.
0.5066.90.89Contig11250_s_atContig11250--4e+0At5g22810GDSL-motif lipase, putativeO.I.H.G.S.X.
0.3138.60.89Contig2688_s_atContig2688--1e-59At5g08530CI51 (51 kDa subunit of complex I)O.I.H.G.S.X.
0.1412.90.89Contig2873_s_atContig2873--2e-4At1g31630AGL86 (AGAMOUS-LIKE 86)O.I.H.G.S.X. / catalytic/ oxidoreductaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.3GSM71145OWB-D unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
10.599.2GSM71146OWB-D unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
8.898.9GSM71147OWB-D unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
6.698.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM261052Bonus Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
4.596.7GSM6890227 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.196.2GSM688903 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.196.2GSM398259Martin_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.494.8GSM6890427 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g01130, orthologous to the query gene, Contig11252_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3846.7At1g01130839359unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.3At1g19830838570auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.3643.6At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.O.I.H.G.S.X.
0.3541.6At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.3338.1At1g75090843846methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.H.G.S.X.
0.2930.3At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.H.G.S.X.
0.2014.4At5g48480834903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.1912.7At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOO.I.H.G.S.X.
0.103.4At3g58770825046unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.103.4At3g53310824499transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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