CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11252_at

Gene name
Homology with Arabidopsis Similar to At1g01130: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.28

%ile 35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.89 Contig11252_at Contig11252 - - 2e+0 At1g01130 unknown protein O.I. H.G. S.X.
0.50 66.9 0.89 Contig11250_s_at Contig11250 - - 4e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.31 38.6 0.89 Contig2688_s_at Contig2688 - - 1e-59 At5g08530 CI51 (51 kDa subunit of complex I) O.I. H.G. S.X.
0.23 26.1 0.90 Contig18428_at Contig18428 - - 7e-7 At1g15060 - O.I. H.G. S.X.
0.14 12.9 0.89 Contig2873_s_at Contig2873 - - 2e-4 At1g31630 AGL86 (AGAMOUS-LIKE 86) O.I. H.G. S.X.
0.11 9.4 0.89 EBpi01_SQ004_D06_s_at EBpi01_SQ004_D06 - - 6e+0 At1g54870 binding / catalytic/ oxidoreductase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.3 99.3 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
10.5 99.2 GSM71146 OWB-D unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
8.8 98.9 GSM71147 OWB-D unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
6.6 98.2 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM261052 Bonus Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
4.5 96.7 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4 94.8 GSM68904 27 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g01130, orthologous to the query gene, Contig11252_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.38 46.7 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.43 55.3 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. H.G. S.X.
0.36 43.6 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. H.G. S.X.
0.35 41.6 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.33 38.1 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. H.G. S.X.
0.29 30.3 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. H.G. S.X.
0.20 14.4 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. H.G. S.X.
0.19 12.7 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. H.G. S.X.
0.10 3.4 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.10 3.4 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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