Co-expression analysis

Gene ID Contig11229_at
Gene name
Homology with ArabidopsisSimilar to At5g60910: AGL8 (agamous-like 8) (HF=2e-4)
Module size 21 genes
NF 0.20
%ile 24.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.91Contig11229_atContig11229--2e-4At5g60910AGL8 (agamous-like 8)O.I.H.G.S.X.
0.5066.90.94Contig11228_atContig11228--5e-1At2g38390peroxidase, putativeO.I.H.G.S.X.
0.3443.60.95Contig16412_atContig16412--1e-13At1g68100IAR1 (IAA-ALANINE RESISTANT 1)O.I.H.G.S.X.
0.2122.60.95Contig6475_atContig6475--3e-10At3g01650RGLG1 (RING domain Ligase1)O.I.H.G.S.X.
0.2122.60.96Contig13131_atContig13131--6e-1At5g15610proteasome family proteinO.I.H.G.S.X.
0.2021.10.95Contig13467_atContig13467--5e-10At1g77180chromatin protein familyO.I.H.G.S.X.
0.2021.10.94Contig19066_atContig19066--4e-1At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.2021.10.93Contig4734_atContig4734--1e-25At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.2021.10.94Contig22600_atContig22600--5e-1At4g23470hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1818.20.95Contig11796_atContig11796--9e-35At4g14240-O.I.H.G.S.X.
0.1716.90.93Contig7123_atContig7123--5e-1At1g34290AtRLP5 (Receptor Like Protein 5)O.I.H.G.S.X.
0.1716.90.95Contig18254_atContig18254--2e-1At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.1615.30.95Contig8431_atContig8431--5e-1At2g42350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1615.30.96Contig8195_atContig8195--4e-90At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.1514.10.94Contig14966_atContig14966--7e-23At3g54190-O.I.H.G.S.X.
0.1514.10.94Contig8018_atContig8018--2e-4At2g03800GEK1 (GEKO1)O.I.H.G.S.X.
0.1412.90.95Contig7815_s_atContig7815--2e-5At5g48930HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)O.I.H.G.S.X.
0.1311.60.94Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.119.40.96Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.119.40.96Contig14607_atContig14607--2e+0At4g37440unknown proteinO.I.H.G.S.X.
0.086.50.94Contig4650_s_atContig4650--5e-9At5g36940CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.999.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.499.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.199.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.995.8GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.895.7GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage