Co-expression analysis

Gene ID	Contig11225_at
Gene name
Homology with Arabidopsis	Similar to At5g13220: JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (HF=7e+0)
Module size	21 genes
NF	0.41
%ile	57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.88	Contig11225_at	Contig11225	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	Contig24721_at	Contig24721	-	-	5e+0	At2g41990	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	HK06I18r_at	HK06I18r	-	-	1e+0	At2g40475	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig2169_at	Contig2169	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.92	Contig1340_at	Contig1340	-	-	2e-55	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.90	Contig10596_at	Contig10596	-	-	8e-10	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig20828_at	Contig20828	-	-	3e-1	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.92	HU09H10u_at	HU09H10u	-	-	1e+1	At4g09647	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig12959_at	Contig12959	-	-	4e-3	At1g31650	ROPGEF14	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	HI04I05u_at	HI04I05u	-	-	2e-2	At5g41060	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.90	Contig1613_at	Contig1613	-	-	3e-1	At1g43970	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig16881_at	Contig16881	-	-	1e-1	At2g01460	ATP binding / kinase	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	HVSMEb0008F12r2_s_at	HVSMEb0008F12r2	-	-	8e-5	At2g25970	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	Contig2134_at	Contig2134	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig7556_s_at	Contig7556	-	-	5e-1	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.90	Contig10816_at	Contig10816	-	-	2e+0	At3g09160	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig12896_at	Contig12896	-	-	2e-3	At5g08630	DDT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig11456_at	Contig11456	-	-	6e-1	At3g32090	transcription factor-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig10899_at	Contig10899	-	-	3e+0	At3g63530	BB (BIG BROTHER)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	rbags1d23_s_at	rbags1d23	-	-	1e+1	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.91	Contig13792_s_at	Contig13792	-	-	4e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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