Co-expression analysis

Gene ID Contig11177_at
Gene name
Homology with ArabidopsisSimilar to At5g53730: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (HF=5e-1)
Module size 6 genes
NF 0.45
%ile 62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.6077.30.92Contig4910_atContig4910--3e+0At5g09280pectate lyase family proteinO.I.H.G.S.X.
0.4661.00.91Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.4053.10.92Contig13884_atContig13884--3e-5At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.4053.10.92Contig7087_atContig7087--8e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.1412.90.92Contig8505_s_atContig8505--2e+0At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6380.30.85HVSMEf0009A08r2_s_atHVSMEf0009A08r2--1e+1At4g32480unknown proteinO.I.H.G.S.X.
0.6077.30.90Contig12332_atContig12332--4e+0At3g50410OBP1 (OBF BINDING PROTEIN 1)O.I.H.G.S.X.
0.5572.00.89Contig9256_s_atContig9256--3e-1At4g33130-O.I.H.G.S.X.
0.5066.90.83HD12K21r_atHD12K21r--1e+1Atmg01030-O.I.H.G.S.X.
0.5066.90.86Contig1687_x_atContig1687--2e+0At5g55450protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5066.90.89Contig807_s_atContig807--6e-53At1g55490CPN60B (CHAPERONIN 60 BETA)O.I.H.G.S.X.
0.5066.90.90Contig14804_s_atContig14804--2e-11At1g31800CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)O.I.H.G.S.X.
0.5066.90.93EBem09_SQ005_B09_s_atEBem09_SQ005_B09--3e+0At4g13500unknown proteinO.I.H.G.S.X.
0.4762.20.89Contig16406_atContig16406--3e-2At3g15030TCP4 (TCP family transcription factor 4)O.I.H.G.S.X.
0.4661.00.85Contig4156_s_atContig4156--2e-39At1g10730clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.4661.00.85Contig40_x_atContig40histone H3 protein-3e-32At5g10980histone H3O.I.H.G.S.X.
0.4356.40.84Contig25355_atContig25355--4e-17At1g30890integral membrane HRF1 family proteinO.I.H.G.S.X.
0.4356.40.87Contig5139_atContig5139--9e-2At1g56170NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)O.I.H.G.S.X.
0.4053.10.85Contig2843_s_atContig2843--4e-20At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.4053.10.89Contig145_atContig145--4e-10At1g08880H2AXAO.I.H.G.S.X.
0.4053.10.89HB22L02r_atHB22L02r--1e+0At1g44770unknown proteinO.I.H.G.S.X.
0.3849.50.89Contig5870_atContig5870--3e-19At1g19360-O.I.H.G.S.X.
0.3647.10.83Contig3303_atContig3303--1e+0At2g14000unknown proteinO.I.H.G.S.X.
0.3647.10.83Contig10603_atContig10603--4e+0At5g66170-O.I.H.G.S.X.
0.3647.10.87HT05M20u_atHT05M20u--3e-1At2g28315-O.I.H.G.S.X.
0.3545.10.88Contig4797_atContig4797--2e+0At3g02480ABA-responsive protein-relatedO.I.H.G.S.X.
0.3342.60.82Contig22469_atContig22469--2e+0At3g49070unknown proteinO.I.H.G.S.X.
0.3342.60.87Contig2834_atContig2834--3e+0At4g11870unknown proteinO.I.H.G.S.X.
0.3342.60.89Contig13377_atContig13377--1e-1At5g64360DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3342.60.90Contig26019_atContig26019--3e+0At2g29650PHT4O.I.H.G.S.X.
0.3240.30.89HX07O15r_atHX07O15r--4e+0At5g05470EIF2 ALPHAO.I.H.G.S.X.
0.2935.50.83Contig14337_atContig14337--4e-8At5g12870MYB46 (MYB DOMAIN PROTEIN 46)O.I.H.G.S.X.
0.2935.50.85EBma08_SQ004_C15_s_atEBma08_SQ004_C15--3e+0At5g17262unknown proteinO.I.H.G.S.X.
0.2935.50.85Contig568_s_atContig568GRP94 homologue-4e-2At1g06240unknown proteinO.I.H.G.S.X.
0.2935.50.86Contig7860_atContig7860--6e-2At3g10730sad1/unc-84-like 2 family proteinO.I.H.G.S.X.
0.2935.50.86HU05H13u_s_atHU05H13u--5e-1At1g55675unknown proteinO.I.H.G.S.X.
0.2935.50.88HS16J10u_atHS16J10u--6e-2At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2935.50.89Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.2835.50.85Contig16537_atContig16537--3e+0At3g27750-O.I.H.G.S.X.
0.2732.10.83HVSMEg0001I20f_atHVSMEg0001I20f--2e-1At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.2732.10.85Contig15980_atContig15980--1e-2At3g47610transcription regulator/ zinc ion bindingO.I.H.G.S.X.
0.2732.10.87Contig15158_s_atContig15158--1e-11At5g65090BST1 (BRISTLED 1)O.I.H.G.S.X.
0.2732.10.88Contig3365_atContig3365--2e-85At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.2528.90.84HVSMEa0003M14r2_x_atHVSMEa0003M14r2--4e+0At3g15909unknown proteinO.I.H.G.S.X.
0.2528.90.86Contig22900_atContig22900very long chain fatty acid condensing enzyme CUT1;3-like-5e-3At1g17330metal-dependent phosphohydrolase HD domain-containing protein-relatedO.I.H.G.S.X.
0.2528.90.88Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.2528.90.89Contig3376_atContig3376--2e-1At1g68020ATTPS6O.I.H.G.S.X.
0.2528.90.90HVSMEa0006I21r2_x_atHVSMEa0006I21r2--3e-1At1g14315-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.899.1GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.196.2GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.196.2GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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