Co-expression analysis

Gene ID	Contig11177_at
Gene name
Homology with Arabidopsis	Similar to At5g53730: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (HF=5e-1)
Module size	6 genes
NF	0.45
%ile	62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig4910_at	Contig4910	-	-	3e+0	At5g09280	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig7087_at	Contig7087	-	-	8e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1	96.2	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the maize gene, Zm.3743.2.A1_at, orthologous to the query gene, Contig11177_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	Zm.3743.2.A1_at	At5g53730	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.6045.1.A1_s_at	At5g53730	alpha tubulin4	-	0	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.5829.1.A1_at	At5g53730	hypothetical protein LOC100278846	-	8e-3	At4g03190	GRH1 (GRR1-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.19361.1.A1_at	At5g53730	hypothetical protein LOC100273777	-	2e-6	At5g64470	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.4245.1.A1_at	At5g53730	-	-	2e+0	At3g07760	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.6241.1.A1_at	At5g53730	hypothetical protein LOC100274594	-	3e-1	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.3168.1.A1_x_at	At5g53730	-	-	5e-2	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.4434.1.S1_at	At5g53730	-	-	2e+0	At4g10925	F-box family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.13363.1.A1_at	At5g53730	hypothetical protein LOC100272241	-	4e+0	At5g51160	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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