CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11177_at

Gene name
Homology with Arabidopsis Similar to At5g53730: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (HF=5e-1)

Module size 6 genes

NF 0.45

%ile 62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.92 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.60 77.3 0.92 Contig4910_at Contig4910 - - 3e+0 At5g09280 pectate lyase family protein O.I. H.G. S.X.
0.46 61.0 0.91 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.40 53.1 0.92 Contig13884_at Contig13884 - - 3e-5 At2g37510 RNA-binding protein, putative O.I. H.G. S.X.
0.40 53.1 0.92 Contig7087_at Contig7087 - - 8e-1 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) O.I. H.G. S.X.
0.14 12.9 0.92 Contig8505_s_at Contig8505 - - 2e+0 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.8 99.1 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.6 98.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.1 98.0 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.1 96.2 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1 96.2 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3104.1.S1_at, orthologous to the query gene, Contig11177_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 Ptp.3104.1.S1_at At5g53730 hypothetical protein - 9e-5 At1g19835 unknown protein O.I. H.G. S.X.
0.55 82.2 Ptp.5590.1.S1_at At5g53730 hypothetical protein - 3e-2 At1g50890 binding O.I. H.G. S.X.
0.29 50.5 Ptp.6305.2.A1_at At5g53730 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.26 45.2 PtpAffx.58827.1.S1_at At5g53730 multidrug/pheromone exporter, MDR family, ABC transporter family - 5e-7 At2g36910 ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) O.I. H.G. S.X.
0.14 23.5 PtpAffx.212302.1.S1_x_at At5g53730 hypothetical protein - 5e-22 At3g56370 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.10 16.3 PtpAffx.29939.1.A1_at At5g53730 hypothetical protein - 7e-1 At1g53625 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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