Co-expression analysis

Gene ID	Contig11158_at
Gene name
Homology with Arabidopsis	Similar to At2g30740: serine/threonine protein kinase, putative (HF=6e-48)
Module size	12 genes
NF	0.49
%ile	68.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	0.89	Contig11158_at	Contig11158	-	-	6e-48	At2g30740	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.88	Contig23913_at	Contig23913	-	-	4e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig12704_at	Contig12704	-	-	9e-2	At3g53470	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.90	Contig20673_at	Contig20673	-	-	2e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.89	HVSMEi0003I03r2_x_at	HVSMEi0003I03r2	-	-	6e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.89	HR01G08u_at	HR01G08u	-	-	1e+1	At5g03010	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.89	Contig14300_at	Contig14300	-	-	2e+0	At4g30980	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig24112_at	Contig24112	-	-	1e+0	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig6871_s_at	Contig6871	-	-	6e-11	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.88	HR01N23u_at	HR01N23u	-	-	3e+0	At1g02360	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.89	Contig15497_at	Contig15497	-	-	7e+0	At5g62576	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.88	Contig1860_s_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.9	99.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
8.4	98.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
8.4	98.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
7.1	98.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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