Co-expression analysis

Gene ID	Contig11156_at
Gene name
Homology with Arabidopsis	Similar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)
Module size	6 genes
NF	0.29
%ile	38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig11156_at	Contig11156	-	-	2e-10	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	HD05C22r_at	HD05C22r	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig16505_at	Contig16505	-	-	8e-7	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage