Co-expression analysis

Gene ID Contig11156_at
Gene name
Homology with ArabidopsisSimilar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)
Module size 6 genes
NF 0.29
%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig11156_atContig11156--2e-10At2g43070protease-associated (PA) domain-containing proteinO.I.H.G.S.X.
0.3647.10.96HD05C22r_atHD05C22r--1e+0At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.3647.10.96Contig12262_atContig12262--2e-1At5g23405high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.2224.20.96Contig16505_atContig16505--8e-7At2g19430transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1919.60.96Contig12335_atContig12335--5e-20At2g22120protein binding / zinc ion bindingO.I.H.G.S.X.
0.1716.90.96Contig5187_atContig5187--3e-9At5g08420RNA bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.697.7GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.997.1GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.696.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1612117_at, orthologous to the query gene, Contig11156_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7591.31612117_atAt2g43070hypothetical protein LOC100258476-2e-33At1g01650aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.3650.71608438_atAt2g43070--6e-2At1g78700brassinosteroid signalling positive regulator-relatedO.I.H.G.S.X.
0.3243.11606715_atAt2g43070hypothetical protein LOC100260666-1e-69At4g02480AAA-type ATPase family proteinO.I.H.G.S.X.
0.2734.01615154_atAt2g43070hypothetical protein LOC100251043-8e-6At3g09085unknown proteinO.I.H.G.S.X.
0.1515.61609035_atAt2g43070hypothetical protein LOC100251284-2e-12At2g40830RHC1AO.I.H.G.S.X.
0.1010.31620463_atAt2g43070hypothetical protein LOC100265246-1e+0At2g27970CKS2 (CDK-subunit 2)O.I.H.G.S.X.
0.1010.31610189_atAt2g43070hypothetical protein LOC100257691-4e+0At5g47830unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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