CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11156_at

Gene name
Homology with Arabidopsis Similar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)

Module size 6 genes

NF 0.29

%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig11156_at Contig11156 - - 2e-10 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.36 47.1 0.96 HD05C22r_at HD05C22r - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.36 47.1 0.96 Contig12262_at Contig12262 - - 2e-1 At5g23405 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.22 24.2 0.96 Contig16505_at Contig16505 - - 8e-7 At2g19430 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.19 19.6 0.96 Contig12335_at Contig12335 - - 5e-20 At2g22120 protein binding / zinc ion binding O.I. H.G. S.X.
0.17 16.9 0.96 Contig5187_at Contig5187 - - 3e-9 At5g08420 RNA binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig11156_at	Contig11156	-	-	2e-10	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	HD05C22r_at	HD05C22r	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.
0.22	24.2	0.96	Contig16505_at	Contig16505	-	-	8e-7	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.19	19.6	0.96	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.17	16.9	0.96	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 97.7 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.6 97.7 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
5.4 97.5 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.4 97.5 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.9 97.1 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.6 96.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.6	97.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the wheat gene, Ta.13399.1.S1_a_at, orthologous to the query gene, Contig11156_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 Ta.13399.1.S1_a_at At2g43070 - - 1e-14 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.42 60.9 Ta.27678.1.S1_at At2g43070 - - 1e-9 At2g03270 DNA-binding protein, putative O.I. H.G. S.X.
0.31 42.7 Ta.28689.1.S1_at At2g43070 - - 4e+0 At3g11200 AL2 (ALFIN-LIKE 2) O.I. H.G. S.X.
0.30 40.9 Ta.10139.1.S1_at At2g43070 ethylene receptor-like protein - 2e-41 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.29 39.2 Ta.9594.1.S1_at At2g43070 - - 3e+0 Atmg00840 - O.I. H.G. S.X.
0.29 39.2 Ta.1931.1.S1_at At2g43070 - - 3e-9 At3g60860 guanine nucleotide exchange family protein O.I. H.G. S.X.
0.27 35.6 TaAffx.12160.1.A1_at At2g43070 - - 8e-1 At5g04470 SIM (SIAMESE) O.I. H.G. S.X.
0.24 30.3 Ta.28833.1.S1_at At2g43070 - - 8e-1 At2g30700 unknown protein O.I. H.G. S.X.
0.24 30.3 Ta.5993.1.S1_at At2g43070 - - 6e-1 At2g42750 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.24 30.3 Ta.9072.1.S1_at At2g43070 - - 4e-19 At4g34110 PAB2 (POLY(A) BINDING 2) O.I. H.G. S.X.
0.23 29.0 Ta.2282.1.S1_x_at At2g43070 - - 2e-14 At1g20760 calcium-binding EF hand family protein O.I. H.G. S.X.
0.23 29.0 Ta.7048.1.S1_at At2g43070 - - 3e+0 At1g68630 unknown protein O.I. H.G. S.X.
0.23 29.0 Ta.20707.1.S1_at At2g43070 - - 1e-15 At4g32390 phosphate translocator-related O.I. H.G. S.X.
0.23 29.0 Ta.6867.1.S1_s_at At2g43070 - - 5e-18 At3g61050 NTMC2T4 O.I. H.G. S.X.
0.22 27.1 Ta.10625.1.S1_at At2g43070 - - 6e+0 At3g57690 AGP23 (ARABINOGALACTAN-PROTEIN 23) O.I. H.G. S.X.
0.21 25.5 Ta.4549.1.S1_at At2g43070 - - 9e-1 At1g66420 transcription regulator O.I. H.G. S.X.
0.20 24.0 Ta.25457.1.S1_at At2g43070 - - 6e+0 At4g15510 photosystem II reaction center PsbP family protein O.I. H.G. S.X.
0.20 24.0 Ta.5506.1.S1_at At2g43070 - - 2e+0 At2g06570 unknown protein O.I. H.G. S.X.
0.20 24.0 Ta.9783.2.S1_x_at At2g43070 - - 5e+0 At2g21465 - O.I. H.G. S.X.
0.18 21.0 Ta.9715.1.A1_at At2g43070 - - 3e-2 At5g22030 UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) O.I. H.G. S.X.
0.18 21.0 Ta.1822.1.S1_at At2g43070 dynamin like Pr6(ADL6) - 4e-16 At1g59610 ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) O.I. H.G. S.X.
0.17 19.8 Ta.12876.1.S1_a_at At2g43070 - - 8e-16 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) O.I. H.G. S.X.
0.17 19.8 TaAffx.38326.1.S1_at At2g43070 - - 3e+0 At1g16880 uridylyltransferase-related O.I. H.G. S.X.
0.16 18.2 Ta.1582.1.S1_at At2g43070 - - 3e-25 At4g12650 - O.I. H.G. S.X.
0.16 18.2 Ta.10847.1.S1_at At2g43070 - - 4e+0 At1g13450 DNA binding protein GT-1 O.I. H.G. S.X.
0.16 18.2 Ta.735.1.S1_at At2g43070 - - 2e-66 At3g62120 tRNA synthetase class II (G, H, P and S) family protein O.I. H.G. S.X.
0.14 15.8 Ta.9783.1.S1_x_at At2g43070 - - 6e-13 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.14 15.8 Ta.9558.1.S1_x_at At2g43070 - - 5e-1 At5g44568 unknown protein O.I. H.G. S.X.
0.14 15.8 Ta.8774.1.S1_a_at At2g43070 - - 7e-2 At3g46110 unknown protein O.I. H.G. S.X.
0.13 14.6 Ta.2841.1.S1_s_at At2g43070 - - 2e-2 At4g20980 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative O.I. H.G. S.X.
0.12 13.3 Ta.7977.1.S1_at At2g43070 - - 1e-30 At3g26370 unknown protein O.I. H.G. S.X.
0.11 12.4 Ta.9077.1.S1_s_at At2g43070 - - 3e-19 At1g77670 aminotransferase class I and II family protein O.I. H.G. S.X.
0.10 11.3 TaAffx.128418.4.S1_s_at At2g43070 - - 8e+0 At5g38420 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) O.I. H.G. S.X.
0.10 11.3 Ta.1847.1.S1_at At2g43070 - - 2e-13 At5g17900 - O.I. H.G. S.X.
0.09 10.4 Ta.23710.2.A1_x_at At2g43070 - - 1e-31 At3g13772 endomembrane protein 70, putative O.I. H.G. S.X.
0.08 9.4 Ta.28845.1.S1_at At2g43070 - - 1e-12 At3g04240 SEC (secret agent) O.I. H.G. S.X.
0.05 6.7 Ta.22952.1.S1_at At2g43070 - - 6e-6 At4g00860 ATOZI1 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.6	Ta.13399.1.S1_a_at	At2g43070	-	-	1e-14	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.
0.42	60.9	Ta.27678.1.S1_at	At2g43070	-	-	1e-9	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.31	42.7	Ta.28689.1.S1_at	At2g43070	-	-	4e+0	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.
0.30	40.9	Ta.10139.1.S1_at	At2g43070	ethylene receptor-like protein	-	2e-41	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.
0.29	39.2	Ta.9594.1.S1_at	At2g43070	-	-	3e+0	Atmg00840	-	O.I.	H.G.	S.X.
0.29	39.2	Ta.1931.1.S1_at	At2g43070	-	-	3e-9	At3g60860	guanine nucleotide exchange family protein	O.I.	H.G.	S.X.
0.27	35.6	TaAffx.12160.1.A1_at	At2g43070	-	-	8e-1	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.
0.24	30.3	Ta.28833.1.S1_at	At2g43070	-	-	8e-1	At2g30700	unknown protein	O.I.	H.G.	S.X.
0.24	30.3	Ta.5993.1.S1_at	At2g43070	-	-	6e-1	At2g42750	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.24	30.3	Ta.9072.1.S1_at	At2g43070	-	-	4e-19	At4g34110	PAB2 (POLY(A) BINDING 2)	O.I.	H.G.	S.X.
0.23	29.0	Ta.2282.1.S1_x_at	At2g43070	-	-	2e-14	At1g20760	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.23	29.0	Ta.7048.1.S1_at	At2g43070	-	-	3e+0	At1g68630	unknown protein	O.I.	H.G.	S.X.
0.23	29.0	Ta.20707.1.S1_at	At2g43070	-	-	1e-15	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.
0.23	29.0	Ta.6867.1.S1_s_at	At2g43070	-	-	5e-18	At3g61050	NTMC2T4	O.I.	H.G.	S.X.
0.22	27.1	Ta.10625.1.S1_at	At2g43070	-	-	6e+0	At3g57690	AGP23 (ARABINOGALACTAN-PROTEIN 23)	O.I.	H.G.	S.X.
0.21	25.5	Ta.4549.1.S1_at	At2g43070	-	-	9e-1	At1g66420	transcription regulator	O.I.	H.G.	S.X.
0.20	24.0	Ta.25457.1.S1_at	At2g43070	-	-	6e+0	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.5506.1.S1_at	At2g43070	-	-	2e+0	At2g06570	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.9783.2.S1_x_at	At2g43070	-	-	5e+0	At2g21465	-	O.I.	H.G.	S.X.
0.18	21.0	Ta.9715.1.A1_at	At2g43070	-	-	3e-2	At5g22030	UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8)	O.I.	H.G.	S.X.
0.18	21.0	Ta.1822.1.S1_at	At2g43070	dynamin like Pr6(ADL6)	-	4e-16	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	O.I.	H.G.	S.X.
0.17	19.8	Ta.12876.1.S1_a_at	At2g43070	-	-	8e-16	At3g19420	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	O.I.	H.G.	S.X.
0.17	19.8	TaAffx.38326.1.S1_at	At2g43070	-	-	3e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.
0.16	18.2	Ta.1582.1.S1_at	At2g43070	-	-	3e-25	At4g12650	-	O.I.	H.G.	S.X.
0.16	18.2	Ta.10847.1.S1_at	At2g43070	-	-	4e+0	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.
0.16	18.2	Ta.735.1.S1_at	At2g43070	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.
0.14	15.8	Ta.9783.1.S1_x_at	At2g43070	-	-	6e-13	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.
0.14	15.8	Ta.9558.1.S1_x_at	At2g43070	-	-	5e-1	At5g44568	unknown protein	O.I.	H.G.	S.X.
0.14	15.8	Ta.8774.1.S1_a_at	At2g43070	-	-	7e-2	At3g46110	unknown protein	O.I.	H.G.	S.X.
0.13	14.6	Ta.2841.1.S1_s_at	At2g43070	-	-	2e-2	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.
0.12	13.3	Ta.7977.1.S1_at	At2g43070	-	-	1e-30	At3g26370	unknown protein	O.I.	H.G.	S.X.
0.11	12.4	Ta.9077.1.S1_s_at	At2g43070	-	-	3e-19	At1g77670	aminotransferase class I and II family protein	O.I.	H.G.	S.X.
0.10	11.3	TaAffx.128418.4.S1_s_at	At2g43070	-	-	8e+0	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	O.I.	H.G.	S.X.
0.10	11.3	Ta.1847.1.S1_at	At2g43070	-	-	2e-13	At5g17900	-	O.I.	H.G.	S.X.
0.09	10.4	Ta.23710.2.A1_x_at	At2g43070	-	-	1e-31	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.
0.08	9.4	Ta.28845.1.S1_at	At2g43070	-	-	1e-12	At3g04240	SEC (secret agent)	O.I.	H.G.	S.X.
0.05	6.7	Ta.22952.1.S1_at	At2g43070	-	-	6e-6	At4g00860	ATOZI1	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig11156_at
Gene name
Homology with Arabidopsis	Similar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)
Module size	6 genes
NF	0.29
%ile	38.3

Co-expression analysis

Gene ID Contig11156_at Gene name Homology with ArabidopsisSimilar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10) Module size 6 genes NF 0.29 %ile 38.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Contig11156_at

Gene name
Homology with Arabidopsis Similar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)

Module size 6 genes

NF 0.29

%ile 38.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays