CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11156_at

Gene name
Homology with Arabidopsis Similar to At2g43070: protease-associated (PA) domain-containing protein (HF=2e-10)

Module size 6 genes

NF 0.29

%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig11156_at Contig11156 - - 2e-10 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.36 47.1 0.96 HD05C22r_at HD05C22r - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.36 47.1 0.96 Contig12262_at Contig12262 - - 2e-1 At5g23405 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.22 24.2 0.96 Contig16505_at Contig16505 - - 8e-7 At2g19430 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.19 19.6 0.96 Contig12335_at Contig12335 - - 5e-20 At2g22120 protein binding / zinc ion binding O.I. H.G. S.X.
0.17 16.9 0.96 Contig5187_at Contig5187 - - 3e-9 At5g08420 RNA binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 97.7 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.6 97.7 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
5.4 97.5 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.4 97.5 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.1 97.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.9 97.1 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.6 96.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.55210.2.S1_at, orthologous to the query gene, Contig11156_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.45 63.9 GmaAffx.55210.2.S1_at At2g43070 - - 3e-32 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.63 82.9 GmaAffx.93491.1.S1_s_at At2g43070 - - 3e-1 At4g38280 unknown protein O.I. H.G. S.X.
0.60 80.7 GmaAffx.91054.1.S1_at At2g43070 - - 2e-8 At1g04230 unknown protein O.I. H.G. S.X.
0.54 74.8 GmaAffx.33620.2.S1_at At2g43070 - - 2e-14 At1g51730 RWD domain-containing protein O.I. H.G. S.X.
0.53 74.2 GmaAffx.82598.2.S1_at At2g43070 - - 8e-8 At5g59830 unknown protein O.I. H.G. S.X.
0.53 74.2 GmaAffx.82078.1.S1_at At2g43070 - - 1e-27 At3g26420 ATRZ-1A O.I. H.G. S.X.
0.50 71.7 GmaAffx.92769.1.S1_s_at At2g43070 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative O.I. H.G. S.X.
0.46 65.5 GmaAffx.89144.1.A1_s_at At2g43070 - - 2e-21 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) O.I. H.G. S.X.
0.44 63.3 GmaAffx.34491.1.S1_at At2g43070 - - 9e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.29 39.0 GmaAffx.90987.1.S1_at At2g43070 - - 1e+0 At5g64750 ABR1 (ABA REPRESSOR1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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