Co-expression analysis

Gene ID Contig11154_at
Gene name
Homology with ArabidopsisSimilar to At5g66210: CPK28 (HF=1e-15)
Module size 8 genes
NF 0.68
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7891.20.92Contig11154_atContig11154--1e-15At5g66210CPK28O.I.H.G.S.X.
0.8694.80.92Contig8468_atContig8468--1e-12At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.7891.20.92HR01A09u_atHR01A09u--2e+0At5g55000FIP2O.I.H.G.S.X.
0.6784.70.92Contig6325_atContig6325--4e-1At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.6380.30.93Contig12027_atContig12027ORG4-2e-3At2g06010ORG4 (OBP3-RESPONSIVE GENE 4)O.I.H.G.S.X.
0.5572.00.92Contig11957_atContig11957--5e-2At3g48280CYP71A25O.I.H.G.S.X.
0.5572.00.94HY02G07u_atHY02G07u--4e+0At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.4458.90.92Contig24268_atContig24268--2e+0At5g57345unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.595.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.595.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.394.6GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM372947genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.294.3GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.194.1GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1608587_at, orthologous to the query gene, Contig11154_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8093.61608587_atAt5g66210hypothetical protein LOC100248850-9e-21At5g66210CPK28O.I.H.G.S.X.
0.3650.71621655_atAt5g66210hypothetical protein LOC100243738-3e-2At5g51670unknown proteinO.I.H.G.S.X.
0.3345.71622425_atAt5g66210similar to TIP1 (TIP GROWTH DEFECTIVE 1)-2e-5At5g20350TIP1 (TIP GROWTH DEFECTIVE 1)O.I.H.G.S.X.
0.1515.61621841_atAt5g66210hypothetical protein LOC100258708-9e-3Atcg01000-O.I.H.G.S.X.
0.1313.31619905_atAt5g66210hypothetical protein LOC100263242-2e-1At2g34160nucleic acid bindingO.I.H.G.S.X.
0.077.81619154_atAt5g66210hypothetical protein LOC100246237-1e-7At4g25770unknown proteinO.I.H.G.S.X.
0.066.81621035_atAt5g66210hypothetical protein LOC100249467-4e-18At1g04210leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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