Co-expression analysis

Gene ID	Contig11070_at
Gene name
Homology with Arabidopsis	Similar to At5g62500: ATEB1B (END BINDING PROTEIN 1B) (HF=2e-1)
Module size	38 genes
NF	0.40
%ile	54.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	0.93	Contig11070_at	Contig11070	-	-	2e-1	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig7775_at	Contig7775	beta3-glucuronyltransferase	-	3e+0	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	Contig15418_at	Contig15418	-	-	4e+0	At5g54940	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig4185_at	Contig4185	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig14467_at	Contig14467	-	-	3e-2	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	HS08H14u_s_at	HS08H14u	-	-	1e+0	At5g04030	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig7916_at	Contig7916	-	-	5e-1	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	Contig16905_at	Contig16905	-	-	1e-32	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	Contig13733_at	Contig13733	-	-	2e-3	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig5449_at	Contig5449	-	-	2e-41	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig10686_at	Contig10686	-	-	4e-8	At4g24180	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig8146_at	Contig8146	-	-	6e-30	At1g79830	GC5 (golgin candidate 5)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig18794_at	Contig18794	-	-	8e+0	At3g54940	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig7661_at	Contig7661	-	-	2e-53	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig14950_at	Contig14950	-	-	3e+0	At5g63250	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig154_at	Contig154	-	-	4e-4	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig2135_s_at	Contig2135	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig7067_at	Contig7067	-	-	2e-14	At3g04240	SEC (secret agent)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig5285_at	Contig5285	-	-	1e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig12243_at	Contig12243	-	-	2e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig13967_at	Contig13967	-	-	8e-6	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig344_at	Contig344	-	-	5e-1	At1g71520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig7402_at	Contig7402	-	-	3e+0	At1g68480	JAG (JAGGED)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig5466_s_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig11048_at	Contig11048	-	-	9e+0	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig2585_s_at	Contig2585	-	-	5e-3	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	HVSMEk0023O04r2_at	HVSMEk0023O04r2	-	-	8e-2	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig5612_at	Contig5612	-	-	3e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.5	91.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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