Co-expression analysis

Gene ID Contig11041_at
Gene name
Homology with ArabidopsisSimilar to At3g08940: LHCB4.2 (light harvesting complex PSII) (HF=1e+0)
Module size 6 genes
NF 0.70
%ile 91.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig11041_atContig11041--1e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.6784.70.93Contig4511_atContig4511SGT1 protein-1e-11At4g11260SGT1BO.I.H.G.S.X.
0.6784.70.93Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.6178.70.93Contig6254_atContig6254--3e+0At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.30.93Contig11519_atContig11519--2e-4At1g66680AR401O.I.H.G.S.X.
0.3647.10.92Contig16898_atContig16898--1e-1At1g44608unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.599.9GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.698.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
8.198.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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