Co-expression analysis

Gene ID	Contig11037_at
Gene name
Homology with Arabidopsis	Similar to At5g23908: unknown protein (HF=7e+0)
Module size	17 genes
NF	0.32
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.86	Contig11037_at	Contig11037	-	-	7e+0	At5g23908	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.93	Contig8027_at	Contig8027	-	-	8e-1	At1g02420	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig11856_at	Contig11856	-	-	3e-6	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	HVSMEf0002H04r2_at	HVSMEf0002H04r2	-	-	3e+0	At5g13250	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.91	Contig8393_at	Contig8393	-	-	5e-2	At4g38560	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.90	Contig14648_at	Contig14648	-	-	5e-1	At2g42360	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig11503_at	Contig11503	-	-	2e+0	At4g03030	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	Contig6308_at	Contig6308	-	-	8e-24	At1g62430	ATCDS1	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig4367_s_at	Contig4367	-	-	3e+0	At3g04300	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig9769_at	Contig9769	-	-	3e-23	At2g30000	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.91	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	Contig11502_at	Contig11502	-	-	2e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.91	Contig14649_s_at	Contig14649	-	-	2e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	Contig20783_at	Contig20783	-	-	3e+0	At2g41230	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig13138_at	Contig13138	-	-	2e-9	At4g18240	ATSS4	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig15874_at	Contig15874	-	-	5e-2	At1g23980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig12451_at	Contig12451	-	-	1e+0	At1g76560	CP12-3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.3	90.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.2	90.3	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.1	89.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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